Non-Coding RNA Search

raor012_n14r1.y1

Sequence:


               
               AGAAAAAATTAACTATATTATACATATGTTACCATTACATAAAACTTTCAAAAGACAAAA
GAACATAGCACAACATAATATTCTGTGGCAATACTTCATACATTGGCTCAAGAAAACCAG
ATTCTTCTAAATGATGTTATTTCCATGGAGTTAACAGAAATAACATACAATTACCATGAA
AATAGACAATTTAGGTCCCATTTACAATACGTTTGGAAGGAAAAAAGCCTGGAGGCAGGG
AAGCTCTAAAATGATAATTATAGTGTACCCATAACTACCAAAGAATGATGAGGTCAATTT
CCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAAAATTAACTATATTATACATATGTTACCATTACATAAAACTTTCAAAAGACAAAA
GAACATAGCACAACATAATATTCTGTGGCAATACTTCATACATTGGCTCAAGAAAACCAG
ATTCTTCTAAATGATGTTATTTCCATGGAGTTAACAGAAATAACATACAATTACCATGAA
AATAGACAATTTAGGTCCCATTTACAATACGTTTGGAAGGAAAAAAGCCTGGAGGCAGGG
AAGCTCTAAAATGATAATTATAGTGTACCCATAACTACCAAAGAATGATGAGGTCAATTT
CCCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               119-236, - strand, RNAz p=0.79801

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-236, - strand, RNAz p=0.79801

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-305, gnl|bosTau2|chr7 (51854072-51853768)
               

               
               1-305, gnl|hg17|chr9 (92363089-92363405)
               

               
               1-305, gnl|Hg17|chr9 (92363464-92363165)
               

               
               1-305, gnl|loxAfr1|scaffold_9788 (1066-1427)
               

               
               1-305, gnl|mm7|chr13 (48999883-48999663)
               

               
               1-305, gnl|oryCun1|scaffold_209029 (51601-51899)
               

               
               1-305, gnl|panTro1|chrUn_random (27919415-27919731)
               

               
               1-305, gnl|rheMac2|chr15 (104419371-104419687)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-305, gnl|bosTau2|chr7 (51854072-51853768)
               

               
               1-305, gnl|hg17|chr9 (92363089-92363405)
               

               
               1-305, gnl|Hg17|chr9 (92363464-92363165)
               

               
               1-305, gnl|loxAfr1|scaffold_9788 (1066-1427)
               

               
               1-305, gnl|mm7|chr13 (48999883-48999663)
               

               
               1-305, gnl|oryCun1|scaffold_209029 (51601-51899)
               

               
               1-305, gnl|panTro1|chrUn_random (27919415-27919731)
               

               
               1-305, gnl|rheMac2|chr15 (104419371-104419687)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	1-305, gnl\|bosTau2\|chr7 (51854072-51853768)
	1-305, gnl\|hg17\|chr9 (92363089-92363405)
	1-305, gnl\|Hg17\|chr9 (92363464-92363165)
	1-305, gnl\|loxAfr1\|scaffold_9788 (1066-1427)
	1-305, gnl\|mm7\|chr13 (48999883-48999663)
	1-305, gnl\|oryCun1\|scaffold_209029 (51601-51899)
	1-305, gnl\|panTro1\|chrUn_random (27919415-27919731)
	1-305, gnl\|rheMac2\|chr15 (104419371-104419687)