Non-Coding RNA Search

raor014_i2r1.y1

Sequence:


               
               CTTTGCCCAGTATCTGGCAGTAGACAGCACTCAAAGGGCAGCCTTTATTATTACTCTATT
AGTAGAATTGATAATCCATCACCAAGGTTCTGCACTGATGATGATAGGGAATCTCTTGGG
GACCAAGGAAACAGGGAGAGAAAACCATTGTTTCTTGAGCACTTACTTTGTACCAGGCGT
GTACATATTTAGCCAGATACGATATAGTCCAAAGCAGCACGCTTGAGAATGGGAAAACGA
TGGCATTTGACCCTAAAGTAGCTCCTTGACCATGTGTCAGTCTTGTCATGGTGCCCAAAA
CTAGTCATAATTTTGAGTTGAGGTCACTGTTAAAGTGTACATTTTAACCTAGGATGATAA
GATCAGGCCATCTTTTTTACCTTAATGTCATTTCATGGAATTAGATGAACCAACTAGCCA
TGCCAGTGTTTCTGGAGTCTGATGGCTTGGGGTCAAAATCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGCCCAGTATCTGGCAGTAGACAGCACTCAAAGGGCAGCCTTTATTATTACTCTATT
AGTAGAATTGATAATCCATCACCAAGGTTCTGCACTGATGATGATAGGGAATCTCTTGGG
GACCAAGGAAACAGGGAGAGAAAACCATTGTTTCTTGAGCACTTACTTTGTACCAGGCGT
GTACATATTTAGCCAGATACGATATAGTCCAAAGCAGCACGCTTGAGAATGGGAAAACGA
TGGCATTTGACCCTAAAGTAGCTCCTTGACCATGTGTCAGTCTTGTCATGGTGCCCAAAA
CTAGTCATAATTTTGAGTTGAGGTCACTGTTAAAGTGTACATTTTAACCTAGGATGATAA
GATCAGGCCATCTTTTTTACCTTAATGTCATTTCATGGAATTAGATGAACCAACTAGCCA
TGCCAGTGTTTCTGGAGTCTGATGGCTTGGGGTCAAAATCCAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               363-463, - strand, RNAz p=0.61397

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               363-463, - strand, RNAz p=0.61397

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-193, gnl|bosTau2|chr8 (57036494-57036680)
               

               
               1-193, gnl|Hg17|chr1 (67649944-67650126)
               


               
               278-463, gnl|bosTau2|chr8 (57037386-57037570)
               

               
               278-463, gnl|canFam2|chr6 (80623694-80623376)
               

               
               278-463, gnl|dasNov1|scaffold_107288 (936-1230)
               

               
               278-463, gnl|hg17|chr1 (67650218-67650503)
               

               
               278-463, gnl|Hg17|chr1 (67650223-67650391)
               

               
               278-463, gnl|mm7|chr6 (67193782-67193475)
               

               
               278-463, gnl|Mm7|chr6 (67193751-67193582)
               

               
               278-463, gnl|oryCun1|scaffold_198679 (233912-233630)
               

               
               278-463, gnl|panTro1|chr1 (66009189-66009474)
               

               
               278-463, gnl|rheMac2|chr1 (70259838-70260128)
               

               
               278-463, gnl|rn3|chr4 (97080482-97080178)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-193, gnl|bosTau2|chr8 (57036494-57036680)
               

               
               1-193, gnl|Hg17|chr1 (67649944-67650126)
               


               
               278-463, gnl|bosTau2|chr8 (57037386-57037570)
               

               
               278-463, gnl|canFam2|chr6 (80623694-80623376)
               

               
               278-463, gnl|dasNov1|scaffold_107288 (936-1230)
               

               
               278-463, gnl|hg17|chr1 (67650218-67650503)
               

               
               278-463, gnl|Hg17|chr1 (67650223-67650391)
               

               
               278-463, gnl|mm7|chr6 (67193782-67193475)
               

               
               278-463, gnl|Mm7|chr6 (67193751-67193582)
               

               
               278-463, gnl|oryCun1|scaffold_198679 (233912-233630)
               

               
               278-463, gnl|panTro1|chr1 (66009189-66009474)
               

               
               278-463, gnl|rheMac2|chr1 (70259838-70260128)
               

               
               278-463, gnl|rn3|chr4 (97080482-97080178)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	1-193, gnl\|bosTau2\|chr8 (57036494-57036680)
	1-193, gnl\|Hg17\|chr1 (67649944-67650126)

	278-463, gnl\|bosTau2\|chr8 (57037386-57037570)
	278-463, gnl\|canFam2\|chr6 (80623694-80623376)
	278-463, gnl\|dasNov1\|scaffold_107288 (936-1230)
	278-463, gnl\|hg17\|chr1 (67650218-67650503)
	278-463, gnl\|Hg17\|chr1 (67650223-67650391)
	278-463, gnl\|mm7\|chr6 (67193782-67193475)
	278-463, gnl\|Mm7\|chr6 (67193751-67193582)
	278-463, gnl\|oryCun1\|scaffold_198679 (233912-233630)
	278-463, gnl\|panTro1\|chr1 (66009189-66009474)
	278-463, gnl\|rheMac2\|chr1 (70259838-70260128)
	278-463, gnl\|rn3\|chr4 (97080482-97080178)