Non-Coding RNA Search

raor021_f11.y1

Sequence:


               
               TCGAGTTTTTTTTTTTTTTTTTTTTTGTGGGGGGAATGGCCATGTCTGCCCACTTTGGAA
GTACACATGTTGAACAGCTTGGTCCATTTGGAAGGCTCCAAGGCATAAAATAAGACCAAC
TTGAGAGAATGATAATTCCAGTTTAGTAGAGCCATGAAAAGCTGAATAATTTAGCAGAGT
CATGAATTTCTATTGTCTCCCTATCCTTTTCACTTGTGTTAACATATTTCAGGTTGGCTT
AAGTGGTTTCTCAACAAGTGATAGTTCTGAACAGTCTGGAAGGGATATAGCTGGGGCATA
GATGGAACTAGGATTAGTTATCCTGCCACTTGTCAGCATGAAAAACCTTACTGTAATTGC
ATATAACTTTTCTGTGTTATCCATGAAACTAAATTTTATGAGGCCAAGAACCTTTTTGTG
ATTGTGATAGACACATAGGTGCTCAATAGGAGTTTATTGAATGAATCAAAGCACTGGGAC
TTGAGTCTTGAAGCAGGCTGGGTTCCAAAGTCAAACCAGGGTGAGCTGTTGGCATCACTT
CGATCTTTAATAAGTGTTTTAAAGATACCGGTTGATGTTTTGGTCTAGAGGCTCATGACG
GTAACCGCAAGTAGTCTGTAATGTATTATGAGAAAGTGGTAGTTGCATTTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAGTTTTTTTTTTTTTTTTTTTTTGTGGGGGGAATGGCCATGTCTGCCCACTTTGGAA
GTACACATGTTGAACAGCTTGGTCCATTTGGAAGGCTCCAAGGCATAAAATAAGACCAAC
TTGAGAGAATGATAATTCCAGTTTAGTAGAGCCATGAAAAGCTGAATAATTTAGCAGAGT
CATGAATTTCTATTGTCTCCCTATCCTTTTCACTTGTGTTAACATATTTCAGGTTGGCTT
AAGTGGTTTCTCAACAAGTGATAGTTCTGAACAGTCTGGAAGGGATATAGCTGGGGCATA
GATGGAACTAGGATTAGTTATCCTGCCACTTGTCAGCATGAAAAACCTTACTGTAATTGC
ATATAACTTTTCTGTGTTATCCATGAAACTAAATTTTATGAGGCCAAGAACCTTTTTGTG
ATTGTGATAGACACATAGGTGCTCAATAGGAGTTTATTGAATGAATCAAAGCACTGGGAC
TTGAGTCTTGAAGCAGGCTGGGTTCCAAAGTCAAACCAGGGTGAGCTGTTGGCATCACTT
CGATCTTTAATAAGTGTTTTAAAGATACCGGTTGATGTTTTGGTCTAGAGGCTCATGACG
GTAACCGCAAGTAGTCTGTAATGTATTATGAGAAAGTGGTAGTTGCATTTTCTG

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               34-164, gnl|bosTau2|chr5 (29439487-29439615)
               

               
               34-164, gnl|canFam2|chr10 (13947107-13947355)
               

               
               34-164, gnl|dasNov1|scaffold_197366 (4229-4484)
               

               
               34-164, gnl|hg17|chr12 (67524296-67524541)
               

               
               34-164, gnl|Hg17|chr12 (67524345-67524468)
               

               
               34-164, gnl|oryCun1|scaffold_86129 (1793-2047)
               

               
               34-164, gnl|panTro1|chr10 (69053409-69053654)
               

               
               34-164, gnl|rheMac2|chr11 (65832577-65832818)
               


               
               168-499, gnl|bosTau2|chr5 (29439591-29439914)
               

               
               168-499, gnl|Hg17|chr12 (67524444-67524717)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-164, gnl|bosTau2|chr5 (29439487-29439615)
               

               
               34-164, gnl|canFam2|chr10 (13947107-13947355)
               

               
               34-164, gnl|dasNov1|scaffold_197366 (4229-4484)
               

               
               34-164, gnl|hg17|chr12 (67524296-67524541)
               

               
               34-164, gnl|Hg17|chr12 (67524345-67524468)
               

               
               34-164, gnl|oryCun1|scaffold_86129 (1793-2047)
               

               
               34-164, gnl|panTro1|chr10 (69053409-69053654)
               

               
               34-164, gnl|rheMac2|chr11 (65832577-65832818)
               


               
               168-499, gnl|bosTau2|chr5 (29439591-29439914)
               

               
               168-499, gnl|Hg17|chr12 (67524444-67524717)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	34-164, gnl\|bosTau2\|chr5 (29439487-29439615)
	34-164, gnl\|canFam2\|chr10 (13947107-13947355)
	34-164, gnl\|dasNov1\|scaffold_197366 (4229-4484)
	34-164, gnl\|hg17\|chr12 (67524296-67524541)
	34-164, gnl\|Hg17\|chr12 (67524345-67524468)
	34-164, gnl\|oryCun1\|scaffold_86129 (1793-2047)
	34-164, gnl\|panTro1\|chr10 (69053409-69053654)
	34-164, gnl\|rheMac2\|chr11 (65832577-65832818)

	168-499, gnl\|bosTau2\|chr5 (29439591-29439914)
	168-499, gnl\|Hg17\|chr12 (67524444-67524717)