Non-Coding RNA Search

raor021_p23.y1

Sequence:


               
               GAAGTTTTGCAGCTAAGGGGAGAAGAGAATTGGAACTATAATTGACAGTGAAAACAGGGC
CCAAAGAGGATTTTAAAATATATATTTTGGAAGAGGTTAACAAAAGCATAAGAAAGTAAT
AAAAGCATTGTGATGGGAATGATCCATTAAAGAAGGAAAAATGTGCTACAGAAAATGGAG
AGAGATGATTAATTGCTGGAGTAGGTGAGAGGAGATGAGATCTTGTGCAAAAGCAGAGAG
AATTGACCTTAGATCAAATTATGGATAGTTCATCCATGATAACATTTGGGACAGCAGAAT
ATTAATAATTTAGATGACAGATTATGACCTTTGGAATTTCAAGTTCTCTGGAACACTGTG
CAGGAAATATTTCAGAATAGAGAGTGGGCCTTACAGCACCAGTCAAATCTTACCATGTAA
AAAAAGTGGGTCAGGTCTTTCAAAAACAAGTTGGGTAACTTTGGATCTTTGTATTTCACC
TGTGAGCCTTGATTTCATCCAGAAAATGAAGAGTCTCTAGGGTACTTTTCACCTCTAACA
GTTTGTGATGCTATATATATAGTGTGCAGCAGTATAGATTTAATAGCTGAAAAACACTCT
CTATTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGTTTTGCAGCTAAGGGGAGAAGAGAATTGGAACTATAATTGACAGTGAAAACAGGGC
CCAAAGAGGATTTTAAAATATATATTTTGGAAGAGGTTAACAAAAGCATAAGAAAGTAAT
AAAAGCATTGTGATGGGAATGATCCATTAAAGAAGGAAAAATGTGCTACAGAAAATGGAG
AGAGATGATTAATTGCTGGAGTAGGTGAGAGGAGATGAGATCTTGTGCAAAAGCAGAGAG
AATTGACCTTAGATCAAATTATGGATAGTTCATCCATGATAACATTTGGGACAGCAGAAT
ATTAATAATTTAGATGACAGATTATGACCTTTGGAATTTCAAGTTCTCTGGAACACTGTG
CAGGAAATATTTCAGAATAGAGAGTGGGCCTTACAGCACCAGTCAAATCTTACCATGTAA
AAAAAGTGGGTCAGGTCTTTCAAAAACAAGTTGGGTAACTTTGGATCTTTGTATTTCACC
TGTGAGCCTTGATTTCATCCAGAAAATGAAGAGTCTCTAGGGTACTTTTCACCTCTAACA
GTTTGTGATGCTATATATATAGTGTGCAGCAGTATAGATTTAATAGCTGAAAAACACTCT
CTATTCTC

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               141-608, gnl|bosTau2|chr29 (16182357-16182813)
               

               
               141-608, gnl|canFam2|chrX (76467205-76467679)
               

               
               141-608, gnl|hg17|chrX (98740002-98740463)
               

               
               141-608, gnl|Hg17|chrX (98740462-98740008)
               

               
               141-608, gnl|mm7|chrX (127592840-127593303)
               

               
               141-608, gnl|Mm7|chrX (127593302-127592826)
               

               
               141-608, gnl|oryCun1|scaffold_210273 (20150-19680)
               

               
               141-608, gnl|panTro1|chrX (102007193-102007654)
               

               
               141-608, gnl|rheMac2|chrX (98370261-98370722)
               

               
               141-608, gnl|rn3|chrX (120366608-120367080)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-608, gnl|bosTau2|chr29 (16182357-16182813)
               

               
               141-608, gnl|canFam2|chrX (76467205-76467679)
               

               
               141-608, gnl|hg17|chrX (98740002-98740463)
               

               
               141-608, gnl|Hg17|chrX (98740462-98740008)
               

               
               141-608, gnl|mm7|chrX (127592840-127593303)
               

               
               141-608, gnl|Mm7|chrX (127593302-127592826)
               

               
               141-608, gnl|oryCun1|scaffold_210273 (20150-19680)
               

               
               141-608, gnl|panTro1|chrX (102007193-102007654)
               

               
               141-608, gnl|rheMac2|chrX (98370261-98370722)
               

               
               141-608, gnl|rn3|chrX (120366608-120367080)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	141-608, gnl\|bosTau2\|chr29 (16182357-16182813)
	141-608, gnl\|canFam2\|chrX (76467205-76467679)
	141-608, gnl\|hg17\|chrX (98740002-98740463)
	141-608, gnl\|Hg17\|chrX (98740462-98740008)
	141-608, gnl\|mm7\|chrX (127592840-127593303)
	141-608, gnl\|Mm7\|chrX (127593302-127592826)
	141-608, gnl\|oryCun1\|scaffold_210273 (20150-19680)
	141-608, gnl\|panTro1\|chrX (102007193-102007654)
	141-608, gnl\|rheMac2\|chrX (98370261-98370722)
	141-608, gnl\|rn3\|chrX (120366608-120367080)