Non-Coding RNA Search

raor029_l12.y1

Sequence:


               
               CTTTTTCCTAGTCTCTGGCACATACATTTGTAGAATACACTGTCGGTTCTTCAAAGTATC
AGTATTGGTGCATTCAAAATGGTAACCTAGACTGATTTTATTACTTTGTTATTTCTGAAA
AAAGGAAAAGAAAATACAACATTCTCTGTATTTCCTTGGGTAAATTCAAGAGGTAAAAAC
AAAGCAGGAGATTCTCGAAAAAGTGTGATTATTGCCTGTACAAAGCTGTGGTTCTGATCA
TGGTTCGACACTAACAAATTCAAATAATGCTCTGATTTAAGAGTTTAATTTTAAATACTT
AAACCAGTTTTTAAAGTTGCTCTTTCTGGTGTTCTGTGCCGAAAATCTGGGATGAACTGT
TTTTCATATGGAATAAATTAATAGGAGGAGCTGTATATGTTTAACCAGTAAGCATTGTAG
GAACAGCTTCTATTGACAGTTCAATTATATTTCTGTTTGCGTTATTTACTTTATGTACAG
GACCTATAATAAGGATTGTGACATCAGGATATTTTTTTCACAATCTACCCAAATGAAAGC
CTGAAAATAAAAACTGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTCCTAGTCTCTGGCACATACATTTGTAGAATACACTGTCGGTTCTTCAAAGTATC
AGTATTGGTGCATTCAAAATGGTAACCTAGACTGATTTTATTACTTTGTTATTTCTGAAA
AAAGGAAAAGAAAATACAACATTCTCTGTATTTCCTTGGGTAAATTCAAGAGGTAAAAAC
AAAGCAGGAGATTCTCGAAAAAGTGTGATTATTGCCTGTACAAAGCTGTGGTTCTGATCA
TGGTTCGACACTAACAAATTCAAATAATGCTCTGATTTAAGAGTTTAATTTTAAATACTT
AAACCAGTTTTTAAAGTTGCTCTTTCTGGTGTTCTGTGCCGAAAATCTGGGATGAACTGT
TTTTCATATGGAATAAATTAATAGGAGGAGCTGTATATGTTTAACCAGTAAGCATTGTAG
GAACAGCTTCTATTGACAGTTCAATTATATTTCTGTTTGCGTTATTTACTTTATGTACAG
GACCTATAATAAGGATTGTGACATCAGGATATTTTTTTCACAATCTACCCAAATGAAAGC
CTGAAAATAAAAACTGATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               311-506, + strand, RNAz p=0.622619

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-506, + strand, RNAz p=0.622619

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL832009, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL832009, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-557, gnl|bosTau2|chr9 (7366436-7366986)
               

               
               1-557, gnl|Hg17|chr6 (76062021-76061473)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-557, gnl|bosTau2|chr9 (7366436-7366986)
               

               
               1-557, gnl|Hg17|chr6 (76062021-76061473)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	1-557, gnl\|bosTau2\|chr9 (7366436-7366986)
	1-557, gnl\|Hg17\|chr6 (76062021-76061473)