Non-Coding RNA Search

raor031_l17.y1

Sequence:


               
               TCATGCAAATTTCTTTCCACCAGTTTCCCCTTAATGATGTCTCAAACCTCTCTTCCTGGA
ATGTGTGCCATAGTGAGTATGCACAGCACTAGATATTCTAGGAAGAAAGATACTATGTAA
GTGTAACTACACATATTCTTCTCAGTCTTATAGGAGAGCTTATTGATTCATAAAACTAGT
AAGACTGTGATTCTGAGCATTGCCACTTTAATCTTAGAACAGTTTTGTTTCTAATATTTC
AATAATAAACACTTTCTGCTTTGAGAGAGGAAAAAAATCACACTGTTTCTGCATTAACAC
ATACATTTTTAGGAATATGTTTTATAAGATACATTGGGGTCGTCCTTCTGGAGCATGTAA
AAGTTTGTACTTCAAAATATATCTAGTATGATTGTTAATGAAAAAAAAAAAAAAAAAAAA
AA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATGCAAATTTCTTTCCACCAGTTTCCCCTTAATGATGTCTCAAACCTCTCTTCCTGGA
ATGTGTGCCATAGTGAGTATGCACAGCACTAGATATTCTAGGAAGAAAGATACTATGTAA
GTGTAACTACACATATTCTTCTCAGTCTTATAGGAGAGCTTATTGATTCATAAAACTAGT
AAGACTGTGATTCTGAGCATTGCCACTTTAATCTTAGAACAGTTTTGTTTCTAATATTTC
AATAATAAACACTTTCTGCTTTGAGAGAGGAAAAAAATCACACTGTTTCTGCATTAACAC
ATACATTTTTAGGAATATGTTTTATAAGATACATTGGGGTCGTCCTTCTGGAGCATGTAA
AAGTTTGTACTTCAAAATATATCTAGTATGATTGTTAATGAAAAAAAAAAAAAAAAAAAA
AA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               3-404, gnl|bosTau2|chr6 (2816759-2817190)
               

               
               3-404, gnl|canFam2|chr32 (40920763-40921268)
               

               
               3-404, gnl|echTel1|scaffold_316915 (18945-19452)
               

               
               3-404, gnl|hg17|chr4 (120313782-120314260)
               

               
               3-404, gnl|Hg17|chr4 (120313944-120314346)
               

               
               3-404, gnl|loxAfr1|scaffold_69344 (4626-4113)
               

               
               3-404, gnl|mm7|chr3 (122948078-122947666)
               

               
               3-404, gnl|oryCun1|scaffold_215307 (135895-135410)
               

               
               3-404, gnl|panTro1|chr3 (136789310-136789788)
               

               
               3-404, gnl|rheMac2|chr5 (111632409-111632887)
               

               
               3-404, gnl|rn3|chr2 (219779851-219779444)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-404, gnl|bosTau2|chr6 (2816759-2817190)
               

               
               3-404, gnl|canFam2|chr32 (40920763-40921268)
               

               
               3-404, gnl|echTel1|scaffold_316915 (18945-19452)
               

               
               3-404, gnl|hg17|chr4 (120313782-120314260)
               

               
               3-404, gnl|Hg17|chr4 (120313944-120314346)
               

               
               3-404, gnl|loxAfr1|scaffold_69344 (4626-4113)
               

               
               3-404, gnl|mm7|chr3 (122948078-122947666)
               

               
               3-404, gnl|oryCun1|scaffold_215307 (135895-135410)
               

               
               3-404, gnl|panTro1|chr3 (136789310-136789788)
               

               
               3-404, gnl|rheMac2|chr5 (111632409-111632887)
               

               
               3-404, gnl|rn3|chr2 (219779851-219779444)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	3-404, gnl\|bosTau2\|chr6 (2816759-2817190)
	3-404, gnl\|canFam2\|chr32 (40920763-40921268)
	3-404, gnl\|echTel1\|scaffold_316915 (18945-19452)
	3-404, gnl\|hg17\|chr4 (120313782-120314260)
	3-404, gnl\|Hg17\|chr4 (120313944-120314346)
	3-404, gnl\|loxAfr1\|scaffold_69344 (4626-4113)
	3-404, gnl\|mm7\|chr3 (122948078-122947666)
	3-404, gnl\|oryCun1\|scaffold_215307 (135895-135410)
	3-404, gnl\|panTro1\|chr3 (136789310-136789788)
	3-404, gnl\|rheMac2\|chr5 (111632409-111632887)
	3-404, gnl\|rn3\|chr2 (219779851-219779444)