Non-Coding RNA Search

raor033_n24.y1

Sequence:


               
               GGCATCTATATATATTTCATAACAATGTCTGTTCTTTATGGATTGATCCATAAATATTTA
TCTATCTGAAAACTTGATACTTGGAATGTTTTCCTTAAAGCATTTGGTGCTCCAAGAAAA
AACATTTGGTGCTAAGAGTTGCAGCACTGATGCCTTTCCCCAAGTTAATTCTATTTTAAA
TTCTTATATTTCTTTCCCAATGAGATGCAGAGTAAAATTTGAGACCCTCCATTAAGTAGG
GAGCAGCATCTGTCATCTATGGATAATTACTATTTTGGCAAAAGTATGTAAGGTTTAAAC
CTCCTATAATTTAAATGGTTAGAAAAGAAAGGATTTGCTTATACTTTTCCTGACTTTCAT
TCTAACCACTTTAAATCATAAATTATTCAGTATTTGTTTTTTCTAATAAATCCTTACTGA
ATGCAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCATCTATATATATTTCATAACAATGTCTGTTCTTTATGGATTGATCCATAAATATTTA
TCTATCTGAAAACTTGATACTTGGAATGTTTTCCTTAAAGCATTTGGTGCTCCAAGAAAA
AACATTTGGTGCTAAGAGTTGCAGCACTGATGCCTTTCCCCAAGTTAATTCTATTTTAAA
TTCTTATATTTCTTTCCCAATGAGATGCAGAGTAAAATTTGAGACCCTCCATTAAGTAGG
GAGCAGCATCTGTCATCTATGGATAATTACTATTTTGGCAAAAGTATGTAAGGTTTAAAC
CTCCTATAATTTAAATGGTTAGAAAAGAAAGGATTTGCTTATACTTTTCCTGACTTTCAT
TCTAACCACTTTAAATCATAAATTATTCAGTATTTGTTTTTTCTAATAAATCCTTACTGA
ATGCAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-198, - strand, RNAz p=0.975655
               

               
               279-396, + strand, RNAz p=0.610066

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-198, - strand, RNAz p=0.975655
               

               
               279-396, + strand, RNAz p=0.610066

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-422, gnl|bosTau2|chr6 (52505977-52505555)
               

               
               1-422, gnl|canFam2|chr32 (7108926-7109444)
               

               
               1-422, gnl|dasNov1|scaffold_3206 (72273-72795)
               

               
               1-422, gnl|echTel1|scaffold_287968 (542-1036)
               

               
               1-422, gnl|hg17|chr4 (81182353-81182874)
               

               
               1-422, gnl|Hg17|chr4 (81182963-81182543)
               

               
               1-422, gnl|mm7|chr5 (97096576-97097054)
               

               
               1-422, gnl|Mm7|chr5 (97097143-97096760)
               

               
               1-422, gnl|monDom2|scaffold_37 (20702659-20702121)
               

               
               1-422, gnl|oryCun1|scaffold_182007 (7041-6543)
               

               
               1-422, gnl|panTro1|chr3 (52540387-52539866)
               

               
               1-422, gnl|rheMac2|chr5 (49672528-49672007)
               

               
               1-422, gnl|rn3|chr14 (13110853-13110338)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-422, gnl|bosTau2|chr6 (52505977-52505555)
               

               
               1-422, gnl|canFam2|chr32 (7108926-7109444)
               

               
               1-422, gnl|dasNov1|scaffold_3206 (72273-72795)
               

               
               1-422, gnl|echTel1|scaffold_287968 (542-1036)
               

               
               1-422, gnl|hg17|chr4 (81182353-81182874)
               

               
               1-422, gnl|Hg17|chr4 (81182963-81182543)
               

               
               1-422, gnl|mm7|chr5 (97096576-97097054)
               

               
               1-422, gnl|Mm7|chr5 (97097143-97096760)
               

               
               1-422, gnl|monDom2|scaffold_37 (20702659-20702121)
               

               
               1-422, gnl|oryCun1|scaffold_182007 (7041-6543)
               

               
               1-422, gnl|panTro1|chr3 (52540387-52539866)
               

               
               1-422, gnl|rheMac2|chr5 (49672528-49672007)
               

               
               1-422, gnl|rn3|chr14 (13110853-13110338)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	1-198, - strand, RNAz p=0.975655
	279-396, + strand, RNAz p=0.610066

	1-422, gnl\|bosTau2\|chr6 (52505977-52505555)
	1-422, gnl\|canFam2\|chr32 (7108926-7109444)
	1-422, gnl\|dasNov1\|scaffold_3206 (72273-72795)
	1-422, gnl\|echTel1\|scaffold_287968 (542-1036)
	1-422, gnl\|hg17\|chr4 (81182353-81182874)
	1-422, gnl\|Hg17\|chr4 (81182963-81182543)
	1-422, gnl\|mm7\|chr5 (97096576-97097054)
	1-422, gnl\|Mm7\|chr5 (97097143-97096760)
	1-422, gnl\|monDom2\|scaffold_37 (20702659-20702121)
	1-422, gnl\|oryCun1\|scaffold_182007 (7041-6543)
	1-422, gnl\|panTro1\|chr3 (52540387-52539866)
	1-422, gnl\|rheMac2\|chr5 (49672528-49672007)
	1-422, gnl\|rn3\|chr14 (13110853-13110338)