Non-Coding RNA Search

raor035_h15.y1

Sequence:


               
               ATGGGACAGTATACACAGCCCGCACTGTTGTGTTGTCTGATGAGAAAAGATCATTCACTA
TATGGCTTTCTAACACAAAGGCACAGACGCAGAAAGAGCTTCCGGTGCTCCTGACACATC
AGAAGAAGGTCCTCAGGAAAAGAAACACCAAAGACACTATTCTCAGGCGTTCCAAGAGGC
GATGGGCCCCTATTCCGTGCTCAATGCAAGAGAATTCCTTAGGCCCTTTCCCGTTGTTGC
TCCAACAGGTTCAATCTGATGCGGCACAGAACTATACTATCTTCTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGACAGTATACACAGCCCGCACTGTTGTGTTGTCTGATGAGAAAAGATCATTCACTA
TATGGCTTTCTAACACAAAGGCACAGACGCAGAAAGAGCTTCCGGTGCTCCTGACACATC
AGAAGAAGGTCCTCAGGAAAAGAAACACCAAAGACACTATTCTCAGGCGTTCCAAGAGGC
GATGGGCCCCTATTCCGTGCTCAATGCAAGAGAATTCCTTAGGCCCTTTCCCGTTGTTGC
TCCAACAGGTTCAATCTGATGCGGCACAGAACTATACTATCTTCTACT

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               1-135, gnl|bosTau2|chr24 (20385081-20384947)
               

               
               1-135, gnl|canFam2|chr7 (61404000-61403762)
               

               
               1-135, gnl|dasNov1|scaffold_1820 (120752-120990)
               

               
               1-135, gnl|echTel1|scaffold_262840 (7599-7840)
               

               
               1-135, gnl|hg17|chr18 (26864919-26865158)
               

               
               1-135, gnl|Hg17|chr18 (26865064-26864930)
               

               
               1-135, gnl|loxAfr1|scaffold_122184 (251-11)
               

               
               1-135, gnl|mm7|chr18 (20362860-20363099)
               

               
               1-135, gnl|Mm7|chr18 (20363005-20362871)
               

               
               1-135, gnl|monDom2|scaffold_4 (125411600-125411357)
               

               
               1-135, gnl|oryCun1|scaffold_202858 (146284-146518)
               

               
               1-135, gnl|panTro1|chr17 (22761750-22761989)
               

               
               1-135, gnl|rheMac2|chr18 (23973587-23973826)
               

               
               1-135, gnl|rn3|chr18 (11880867-11881106)
               

               
               1-135, gnl|xenTro1|scaffold_102 (1175599-1175818)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-135, gnl|bosTau2|chr24 (20385081-20384947)
               

               
               1-135, gnl|canFam2|chr7 (61404000-61403762)
               

               
               1-135, gnl|dasNov1|scaffold_1820 (120752-120990)
               

               
               1-135, gnl|echTel1|scaffold_262840 (7599-7840)
               

               
               1-135, gnl|hg17|chr18 (26864919-26865158)
               

               
               1-135, gnl|Hg17|chr18 (26865064-26864930)
               

               
               1-135, gnl|loxAfr1|scaffold_122184 (251-11)
               

               
               1-135, gnl|mm7|chr18 (20362860-20363099)
               

               
               1-135, gnl|Mm7|chr18 (20363005-20362871)
               

               
               1-135, gnl|monDom2|scaffold_4 (125411600-125411357)
               

               
               1-135, gnl|oryCun1|scaffold_202858 (146284-146518)
               

               
               1-135, gnl|panTro1|chr17 (22761750-22761989)
               

               
               1-135, gnl|rheMac2|chr18 (23973587-23973826)
               

               
               1-135, gnl|rn3|chr18 (11880867-11881106)
               

               
               1-135, gnl|xenTro1|scaffold_102 (1175599-1175818)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               aor (0.195274)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	1-135, gnl\|bosTau2\|chr24 (20385081-20384947)
	1-135, gnl\|canFam2\|chr7 (61404000-61403762)
	1-135, gnl\|dasNov1\|scaffold_1820 (120752-120990)
	1-135, gnl\|echTel1\|scaffold_262840 (7599-7840)
	1-135, gnl\|hg17\|chr18 (26864919-26865158)
	1-135, gnl\|Hg17\|chr18 (26865064-26864930)
	1-135, gnl\|loxAfr1\|scaffold_122184 (251-11)
	1-135, gnl\|mm7\|chr18 (20362860-20363099)
	1-135, gnl\|Mm7\|chr18 (20363005-20362871)
	1-135, gnl\|monDom2\|scaffold_4 (125411600-125411357)
	1-135, gnl\|oryCun1\|scaffold_202858 (146284-146518)
	1-135, gnl\|panTro1\|chr17 (22761750-22761989)
	1-135, gnl\|rheMac2\|chr18 (23973587-23973826)
	1-135, gnl\|rn3\|chr18 (11880867-11881106)
	1-135, gnl\|xenTro1\|scaffold_102 (1175599-1175818)