Non-Coding RNA Search

rcad21b_o7.y1

Sequence:


               
               GTGAGTCAAAATAAAGATGGCTGGTGGCAAATAAGATGAATCTAAGAGAGGCATTTCCAG
GCCTGTCCTTTCTCCTCCCCTGAGTTAGCCACAAGCCCACAGCTCGGCGCAGCCTCTAGA
TGCCTTTCTCCTGAGGTTACTGCTGTCCCGCACTATCAGCACAGAGGCAGAGGCCCACGG
CAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGTCAAAATAAAGATGGCTGGTGGCAAATAAGATGAATCTAAGAGAGGCATTTCCAG
GCCTGTCCTTTCTCCTCCCCTGAGTTAGCCACAAGCCCACAGCTCGGCGCAGCCTCTAGA
TGCCTTTCTCCTGAGGTTACTGCTGTCCCGCACTATCAGCACAGAGGCAGAGGCCCACGG
CAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-149, + strand, RNAz p=0.987173

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-149, + strand, RNAz p=0.987173

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-176, gnl|bosTau2|chr3 (73656633-73656467)
               

               
               1-176, gnl|canFam2|chr15 (6598356-6597628)
               

               
               1-176, gnl|echTel1|scaffold_276536 (48755-48038)
               

               
               1-176, gnl|hg17|chr1 (39339298-39340023)
               

               
               1-176, gnl|Hg17|chr1 (39339841-39339676)
               

               
               1-176, gnl|loxAfr1|scaffold_80950 (5-734)
               

               
               1-176, gnl|mm7|chr4 (123017874-123017138)
               

               
               1-176, gnl|Mm7|chr4 (123017318-123017507)
               

               
               1-176, gnl|monDom2|scaffold_43 (10009396-10008690)
               

               
               1-176, gnl|oryCun1|scaffold_179234 (60166-59477)
               

               
               1-176, gnl|panTro1|chr1 (40219501-40220226)
               

               
               1-176, gnl|rheMac2|chr1 (42078655-42079380)
               

               
               1-176, gnl|rn3|chr5 (142880367-142879658)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-176, gnl|bosTau2|chr3 (73656633-73656467)
               

               
               1-176, gnl|canFam2|chr15 (6598356-6597628)
               

               
               1-176, gnl|echTel1|scaffold_276536 (48755-48038)
               

               
               1-176, gnl|hg17|chr1 (39339298-39340023)
               

               
               1-176, gnl|Hg17|chr1 (39339841-39339676)
               

               
               1-176, gnl|loxAfr1|scaffold_80950 (5-734)
               

               
               1-176, gnl|mm7|chr4 (123017874-123017138)
               

               
               1-176, gnl|Mm7|chr4 (123017318-123017507)
               

               
               1-176, gnl|monDom2|scaffold_43 (10009396-10008690)
               

               
               1-176, gnl|oryCun1|scaffold_179234 (60166-59477)
               

               
               1-176, gnl|panTro1|chr1 (40219501-40220226)
               

               
               1-176, gnl|rheMac2|chr1 (42078655-42079380)
               

               
               1-176, gnl|rn3|chr5 (142880367-142879658)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	1-176, gnl\|bosTau2\|chr3 (73656633-73656467)
	1-176, gnl\|canFam2\|chr15 (6598356-6597628)
	1-176, gnl\|echTel1\|scaffold_276536 (48755-48038)
	1-176, gnl\|hg17\|chr1 (39339298-39340023)
	1-176, gnl\|Hg17\|chr1 (39339841-39339676)
	1-176, gnl\|loxAfr1\|scaffold_80950 (5-734)
	1-176, gnl\|mm7\|chr4 (123017874-123017138)
	1-176, gnl\|Mm7\|chr4 (123017318-123017507)
	1-176, gnl\|monDom2\|scaffold_43 (10009396-10008690)
	1-176, gnl\|oryCun1\|scaffold_179234 (60166-59477)
	1-176, gnl\|panTro1\|chr1 (40219501-40220226)
	1-176, gnl\|rheMac2\|chr1 (42078655-42079380)
	1-176, gnl\|rn3\|chr5 (142880367-142879658)