Non-Coding RNA Search

rcad24b_f14.y1

Sequence:


               
               GCTACCTGAAGCTGCGAGAATACACCAAAGCCGTGGAGTGCTGTGACAAGGCCCTTGGAC
TGGACAGTGCCAATGAGAAGGGCTTGTACAGGAGGGGTGAAGCCCAGCTGCTCATGAACG
AGTTTGAGTCAGCCAGGGGCGACTTTGAGAAGGTGTTGGAAGTAAATCCACAGAATAAGG
CCGCGAGGCTGCAGATCTCCATGTGCCAGAAAAAGGCTAAGGAGCACAACGAGCGGGATC
GCAGGATATATGCCAACATGTTCAAGAAGTTTGCAGAGCAGGATGCAAAGGAAGAGGCCA
GTAAAGCAATGAGCAAGAAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTACCTGAAGCTGCGAGAATACACCAAAGCCGTGGAGTGCTGTGACAAGGCCCTTGGAC
TGGACAGTGCCAATGAGAAGGGCTTGTACAGGAGGGGTGAAGCCCAGCTGCTCATGAACG
AGTTTGAGTCAGCCAGGGGCGACTTTGAGAAGGTGTTGGAAGTAAATCCACAGAATAAGG
CCGCGAGGCTGCAGATCTCCATGTGCCAGAAAAAGGCTAAGGAGCACAACGAGCGGGATC
GCAGGATATATGCCAACATGTTCAAGAAGTTTGCAGAGCAGGATGCAAAGGAAGAGGCCA
GTAAAGCAATGAGCAAGAAGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9GK72_LEMCA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9GK72_LEMCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-159, + strand, RNAz p=0.879433

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-159, + strand, RNAz p=0.879433

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               41-291, gnl|bosTau2|chr23 (7344731-7344981)
               

               
               41-291, gnl|canFam2|chr12 (7729809-7730064)
               

               
               41-291, gnl|danRer3|chr6 (22968245-22968002)
               

               
               41-291, gnl|dasNov1|scaffold_20155 (14669-14414)
               

               
               41-291, gnl|echTel1|scaffold_289867 (17821-18076)
               

               
               41-291, gnl|fr1|chrUn (216501356-216501603)
               

               
               41-291, gnl|galGal2|chr32 (980719-980472)
               

               
               41-291, gnl|hg17|chr6 (35652736-35652991)
               

               
               41-291, gnl|Hg17|chr6 (35652998-35652748)
               

               
               41-291, gnl|loxAfr1|scaffold_9480 (10164-10419)
               

               
               41-291, gnl|mm7|chr17 (26589060-26589311)
               

               
               41-291, gnl|Mm7|chr17 (26589318-26589068)
               

               
               41-291, gnl|monDom2|scaffold_42 (11420668-11420416)
               

               
               41-291, gnl|oryCun1|scaffold_198284 (177294-177039)
               

               
               41-291, gnl|panTro1|chr5 (36109085-36109340)
               

               
               41-291, gnl|rheMac2|chr4 (35306572-35306827)
               

               
               41-291, gnl|rn3|chr20 (6640854-6641102)
               

               
               41-291, gnl|tetNig1|chr11 (5150736-5150979)
               

               
               41-291, gnl|xenTro1|scaffold_2411 (19738-19490)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-291, gnl|bosTau2|chr23 (7344731-7344981)
               

               
               41-291, gnl|canFam2|chr12 (7729809-7730064)
               

               
               41-291, gnl|danRer3|chr6 (22968245-22968002)
               

               
               41-291, gnl|dasNov1|scaffold_20155 (14669-14414)
               

               
               41-291, gnl|echTel1|scaffold_289867 (17821-18076)
               

               
               41-291, gnl|fr1|chrUn (216501356-216501603)
               

               
               41-291, gnl|galGal2|chr32 (980719-980472)
               

               
               41-291, gnl|hg17|chr6 (35652736-35652991)
               

               
               41-291, gnl|Hg17|chr6 (35652998-35652748)
               

               
               41-291, gnl|loxAfr1|scaffold_9480 (10164-10419)
               

               
               41-291, gnl|mm7|chr17 (26589060-26589311)
               

               
               41-291, gnl|Mm7|chr17 (26589318-26589068)
               

               
               41-291, gnl|monDom2|scaffold_42 (11420668-11420416)
               

               
               41-291, gnl|oryCun1|scaffold_198284 (177294-177039)
               

               
               41-291, gnl|panTro1|chr5 (36109085-36109340)
               

               
               41-291, gnl|rheMac2|chr4 (35306572-35306827)
               

               
               41-291, gnl|rn3|chr20 (6640854-6641102)
               

               
               41-291, gnl|tetNig1|chr11 (5150736-5150979)
               

               
               41-291, gnl|xenTro1|scaffold_2411 (19738-19490)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	41-291, gnl\|bosTau2\|chr23 (7344731-7344981)
	41-291, gnl\|canFam2\|chr12 (7729809-7730064)
	41-291, gnl\|danRer3\|chr6 (22968245-22968002)
	41-291, gnl\|dasNov1\|scaffold_20155 (14669-14414)
	41-291, gnl\|echTel1\|scaffold_289867 (17821-18076)
	41-291, gnl\|fr1\|chrUn (216501356-216501603)
	41-291, gnl\|galGal2\|chr32 (980719-980472)
	41-291, gnl\|hg17\|chr6 (35652736-35652991)
	41-291, gnl\|Hg17\|chr6 (35652998-35652748)
	41-291, gnl\|loxAfr1\|scaffold_9480 (10164-10419)
	41-291, gnl\|mm7\|chr17 (26589060-26589311)
	41-291, gnl\|Mm7\|chr17 (26589318-26589068)
	41-291, gnl\|monDom2\|scaffold_42 (11420668-11420416)
	41-291, gnl\|oryCun1\|scaffold_198284 (177294-177039)
	41-291, gnl\|panTro1\|chr5 (36109085-36109340)
	41-291, gnl\|rheMac2\|chr4 (35306572-35306827)
	41-291, gnl\|rn3\|chr20 (6640854-6641102)
	41-291, gnl\|tetNig1\|chr11 (5150736-5150979)
	41-291, gnl\|xenTro1\|scaffold_2411 (19738-19490)