Non-Coding RNA Search

rcad25b_g17.y1

Sequence:


               
               CTTGGAACCACCAAGTGTGGCCTCAAATGCCAAGGCCACAGGCACACTCAAGAGGCCCAC
CAGCCTGAGCCGCCACGCCAGTGCGGCTGGCTTCCCATTGTCCGGAGCCAGCACCTGGAC
GCTTGGCCGTGGCCACCGCAGCCCACTGACCACGGCCAGTCCGGCCGAGGTACCCAACCA
GGGACCCTGCCCCGACACCGTGGAGGACATCTCCCATCTGCTGGCTGACGTGGCCCGCTT
TGCCGAGGGCCTTGAGAAGCTGAAGGAGTGTGTTCTGCATGACGACCTCCTTGAGGCCCG
CCGGCCACTGGCCCATGAGCGCCTGGGTGAGGCCCTCCGTGTGATGCGCCAGGTCATCTC
TAAGTACCCACTGCTGAACACTCTGGAGACGCTCACGGCTGCTGGCACTCTCATTGCCAA
GATCAAAGCCTTCCATTACGAGTCCAACAATGAGTCTGACAAGCAGGAGTTTGAGAAGGC
TTTGGAGACCATTGCCGTCTCCTTCAGTAGCACAGTGTCCGAATTCCTCATGGGTGAAGT
GGACAGCAGCATTCTCCTGTCAGTGCCCCCCGGGGACCCGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGAACCACCAAGTGTGGCCTCAAATGCCAAGGCCACAGGCACACTCAAGAGGCCCAC
CAGCCTGAGCCGCCACGCCAGTGCGGCTGGCTTCCCATTGTCCGGAGCCAGCACCTGGAC
GCTTGGCCGTGGCCACCGCAGCCCACTGACCACGGCCAGTCCGGCCGAGGTACCCAACCA
GGGACCCTGCCCCGACACCGTGGAGGACATCTCCCATCTGCTGGCTGACGTGGCCCGCTT
TGCCGAGGGCCTTGAGAAGCTGAAGGAGTGTGTTCTGCATGACGACCTCCTTGAGGCCCG
CCGGCCACTGGCCCATGAGCGCCTGGGTGAGGCCCTCCGTGTGATGCGCCAGGTCATCTC
TAAGTACCCACTGCTGAACACTCTGGAGACGCTCACGGCTGCTGGCACTCTCATTGCCAA
GATCAAAGCCTTCCATTACGAGTCCAACAATGAGTCTGACAAGCAGGAGTTTGAGAAGGC
TTTGGAGACCATTGCCGTCTCCTTCAGTAGCACAGTGTCCGAATTCCTCATGGGTGAAGT
GGACAGCAGCATTCTCCTGTCAGTGCCCCCCGGGGACCCGGGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               O78181_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               O78181_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-197, - strand, RNAz p=0.953891

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-197, - strand, RNAz p=0.953891

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-282, gnl|bosTau2|chr7 (10322335-10322612)
               

               
               5-282, gnl|Hg17|chr19 (1019464-1019741)
               

               
               5-282, gnl|Mm7|chr10 (79797835-79798118)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-282, gnl|bosTau2|chr7 (10322335-10322612)
               

               
               5-282, gnl|Hg17|chr19 (1019464-1019741)
               

               
               5-282, gnl|Mm7|chr10 (79797835-79798118)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	5-282, gnl\|bosTau2\|chr7 (10322335-10322612)
	5-282, gnl\|Hg17\|chr19 (1019464-1019741)
	5-282, gnl\|Mm7\|chr10 (79797835-79798118)