Non-Coding RNA Search

rcbe03_p22.y1

Sequence:


               
               TCATTCATTGGCTGCTTAGGAGGTGAGCTGCTCTTACAAGGCCCAGTGTTTATCAAAGAG
CCCAGCAACAGCATTTTTCCTGTTGGTACAGAGGATAAAAAAATAACTTTAAGTTGTGAA
GCACGAGGCAACCCTACACCTCATTACAGGTACAGTGGAAAGTTTGAAAATCCAAATGAA
GAAAAAAAAAGATGCGGCAATTGTGAATTTTTTTCGCTTCAACATATTTATGCTACAAGA
AATCATACATGAAGCTCTAGTTGTCTGCTGTATGCAACAGAGCTGGTATATAAACATTTG
GATCCATATTATATATGTTTAATTCACTTTATTGTAAGGATTCTTGAGTAAAGAAAAATA
TAGTAGAATCTCTTAAATAAGCAATGTTTTTTCACTGATTTGTGGTAAAATTTAGTGTAC
AAACTTGAATTTACATGTAGTCCTTGGAACACATCTATTGTGAGGATAAAAATGTGCTTT
AAAGTTATGTAGCAATCATAGGTTTAGAAAAAAATACTTTAGTGTCTGCCTTTCTTCCTT
TACTATTCTACTGGGCACATTTTAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTCATTGGCTGCTTAGGAGGTGAGCTGCTCTTACAAGGCCCAGTGTTTATCAAAGAG
CCCAGCAACAGCATTTTTCCTGTTGGTACAGAGGATAAAAAAATAACTTTAAGTTGTGAA
GCACGAGGCAACCCTACACCTCATTACAGGTACAGTGGAAAGTTTGAAAATCCAAATGAA
GAAAAAAAAAGATGCGGCAATTGTGAATTTTTTTCGCTTCAACATATTTATGCTACAAGA
AATCATACATGAAGCTCTAGTTGTCTGCTGTATGCAACAGAGCTGGTATATAAACATTTG
GATCCATATTATATATGTTTAATTCACTTTATTGTAAGGATTCTTGAGTAAAGAAAAATA
TAGTAGAATCTCTTAAATAAGCAATGTTTTTTCACTGATTTGTGGTAAAATTTAGTGTAC
AAACTTGAATTTACATGTAGTCCTTGGAACACATCTATTGTGAGGATAAAAATGTGCTTT
AAAGTTATGTAGCAATCATAGGTTTAGAAAAAAATACTTTAGTGTCTGCCTTTCTTCCTT
TACTATTCTACTGGGCACATTTTAGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               21-140, - strand, RNAz p=0.528555

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               21-140, - strand, RNAz p=0.528555

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               21-567, gnl|bosTau2|chr22 (22797360-22796804)
               

               
               21-567, gnl|Hg17|chr3 (74631628-74631093)
               

               
               21-567, gnl|Mm7|chr6 (102528115-102527548)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-567, gnl|bosTau2|chr22 (22797360-22796804)
               

               
               21-567, gnl|Hg17|chr3 (74631628-74631093)
               

               
               21-567, gnl|Mm7|chr6 (102528115-102527548)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbe (0.239234)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)

	21-567, gnl\|bosTau2\|chr22 (22797360-22796804)
	21-567, gnl\|Hg17\|chr3 (74631628-74631093)
	21-567, gnl\|Mm7\|chr6 (102528115-102527548)