Non-Coding RNA Search

rcbe14_l8.y1

Sequence:


               
               AAAAATCTTGTCTTCTCAGAAGGTTGTTTACTGTTCTATTCAAAGATCAATTTGTCATGT
CAACCCTTTCTCTAATACAATGGCAAGTGGCAAGAACAAACTGTACAGAATCCTGTTTCC
AAGAATACCCTTCCTGAGGCCAAGATGTGTCCTCTGGAAAGATACCCATGACACAGACCA
CAGTGGACACCAACTCAGATACTGAGGGAAGGTTCCACGACAGCTGAACATGGACAGCAG
ACATGCTGAACACTGAGCCCCTTAGTACAGAGCTGCTAAGCTTTCCTCTCAAGCTGACGG
GGGCTGGTACTGCCTTGAAGCCCTGGGAGATGCCATGCCAATTCCCAGCAAGGTCTTTAT
TGTTGAAAGTCTTGCACGATGACATCTTTATTCATGTGAAAATACAGGATGAATTTCAAC
TATATGATATTGTTTATGTTCATTAGAAATGTTATTTGTCTTTACCAAGTCTGGTTTCAA
TGAACCGGCTATGTAATGGATATTAAATAAACATGGAATTTTACATGTTCATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATCTTGTCTTCTCAGAAGGTTGTTTACTGTTCTATTCAAAGATCAATTTGTCATGT
CAACCCTTTCTCTAATACAATGGCAAGTGGCAAGAACAAACTGTACAGAATCCTGTTTCC
AAGAATACCCTTCCTGAGGCCAAGATGTGTCCTCTGGAAAGATACCCATGACACAGACCA
CAGTGGACACCAACTCAGATACTGAGGGAAGGTTCCACGACAGCTGAACATGGACAGCAG
ACATGCTGAACACTGAGCCCCTTAGTACAGAGCTGCTAAGCTTTCCTCTCAAGCTGACGG
GGGCTGGTACTGCCTTGAAGCCCTGGGAGATGCCATGCCAATTCCCAGCAAGGTCTTTAT
TGTTGAAAGTCTTGCACGATGACATCTTTATTCATGTGAAAATACAGGATGAATTTCAAC
TATATGATATTGTTTATGTTCATTAGAAATGTTATTTGTCTTTACCAAGTCTGGTTTCAA
TGAACCGGCTATGTAATGGATATTAAATAAACATGGAATTTTACATGTTCATAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               416-534, - strand, RNAz p=0.557368

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               416-534, - strand, RNAz p=0.557368

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               21-122, gnl|bosTau2|chr7 (56931727-56931626)
               

               
               21-122, gnl|Hg17|chr5 (87743719-87743815)
               


               
               152-534, gnl|bosTau2|chr7 (56909871-56909497)
               

               
               152-534, gnl|canFam2|chr3 (23092380-23092040)
               

               
               152-534, gnl|dasNov1|scaffold_5392 (6870-6538)
               

               
               152-534, gnl|echTel1|scaffold_205426 (917-1262)
               

               
               152-534, gnl|hg17|chr5 (87767864-87768203)
               

               
               152-534, gnl|Hg17|chr5 (87767862-87768245)
               

               
               152-534, gnl|loxAfr1|scaffold_3834 (61416-61754)
               

               
               152-534, gnl|mm7|chr13 (81095806-81095466)
               

               
               152-534, gnl|Mm7|chr13 (81095806-81095418)
               

               
               152-534, gnl|monDom2|scaffold_20 (12161185-12160825)
               

               
               152-534, gnl|oryCun1|scaffold_165892 (8021-8331)
               

               
               152-534, gnl|panTro1|chr4 (27470009-27469670)
               

               
               152-534, gnl|rheMac2|chr6 (84720186-84720523)
               

               
               152-534, gnl|rn3|chr2 (12595482-12595143)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-122, gnl|bosTau2|chr7 (56931727-56931626)
               

               
               21-122, gnl|Hg17|chr5 (87743719-87743815)
               


               
               152-534, gnl|bosTau2|chr7 (56909871-56909497)
               

               
               152-534, gnl|canFam2|chr3 (23092380-23092040)
               

               
               152-534, gnl|dasNov1|scaffold_5392 (6870-6538)
               

               
               152-534, gnl|echTel1|scaffold_205426 (917-1262)
               

               
               152-534, gnl|hg17|chr5 (87767864-87768203)
               

               
               152-534, gnl|Hg17|chr5 (87767862-87768245)
               

               
               152-534, gnl|loxAfr1|scaffold_3834 (61416-61754)
               

               
               152-534, gnl|mm7|chr13 (81095806-81095466)
               

               
               152-534, gnl|Mm7|chr13 (81095806-81095418)
               

               
               152-534, gnl|monDom2|scaffold_20 (12161185-12160825)
               

               
               152-534, gnl|oryCun1|scaffold_165892 (8021-8331)
               

               
               152-534, gnl|panTro1|chr4 (27470009-27469670)
               

               
               152-534, gnl|rheMac2|chr6 (84720186-84720523)
               

               
               152-534, gnl|rn3|chr2 (12595482-12595143)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbe (0.239234)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)

	21-122, gnl\|bosTau2\|chr7 (56931727-56931626)
	21-122, gnl\|Hg17\|chr5 (87743719-87743815)

	152-534, gnl\|bosTau2\|chr7 (56909871-56909497)
	152-534, gnl\|canFam2\|chr3 (23092380-23092040)
	152-534, gnl\|dasNov1\|scaffold_5392 (6870-6538)
	152-534, gnl\|echTel1\|scaffold_205426 (917-1262)
	152-534, gnl\|hg17\|chr5 (87767864-87768203)
	152-534, gnl\|Hg17\|chr5 (87767862-87768245)
	152-534, gnl\|loxAfr1\|scaffold_3834 (61416-61754)
	152-534, gnl\|mm7\|chr13 (81095806-81095466)
	152-534, gnl\|Mm7\|chr13 (81095806-81095418)
	152-534, gnl\|monDom2\|scaffold_20 (12161185-12160825)
	152-534, gnl\|oryCun1\|scaffold_165892 (8021-8331)
	152-534, gnl\|panTro1\|chr4 (27470009-27469670)
	152-534, gnl\|rheMac2\|chr6 (84720186-84720523)
	152-534, gnl\|rn3\|chr2 (12595482-12595143)