rcbe16_f19.y1
|
ATGAACGGTTAACAACAATTGCACATAAGTAAGCCATTAGTCGTACCACCCCTGATTTTT
TATGACATAGTGTACCATAGTTTTGAAACAGTCTTCCTGTTGTGTAGCAGATTCCTGAGT
CTTCTATCTCCATAGTAATATCTCTGTACTCAGGGATCCTGACCATAACTGTGTTAACTG
TTTTTCAATTGGTTATGTTTTTGCATTTGGTTAGGCAAGCTTTCAGTCGGCGGGGCAAAT
CCCGTTACAATGTAATCTCTGTATAACTAAAGGCCTCCATAGTTTAGCAGATGATTCCTT
TACTTGAAGCAAAGTTCAGTAACAAAGTAGTGTGCTCCCCAAATTTGACAGTTCCTTAGA
GGTTCTTTGTATGGTATTTGATATGTATATTGCTTCATAAATAGGAATTATAATTTTTTT
GATAACCAACTCTAATAGTTCATGTATTTTGAGATTCAGAAAAAAGATTGTAAAATATGT
TTTGTTTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATGAACGGTTAACAACAATTGCACATAAGTAAGCCATTAGTCGTACCACCCCTGATTTTT
TATGACATAGTGTACCATAGTTTTGAAACAGTCTTCCTGTTGTGTAGCAGATTCCTGAGT
CTTCTATCTCCATAGTAATATCTCTGTACTCAGGGATCCTGACCATAACTGTGTTAACTG
TTTTTCAATTGGTTATGTTTTTGCATTTGGTTAGGCAAGCTTTCAGTCGGCGGGGCAAAT
CCCGTTACAATGTAATCTCTGTATAACTAAAGGCCTCCATAGTTTAGCAGATGATTCCTT
TACTTGAAGCAAAGTTCAGTAACAAAGTAGTGTGCTCCCCAAATTTGACAGTTCCTTAGA
GGTTCTTTGTATGGTATTTGATATGTATATTGCTTCATAAATAGGAATTATAATTTTTTT
GATAACCAACTCTAATAGTTCATGTATTTTGAGATTCAGAAAAAAGATTGTAAAATATGT
TTTGTTTTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
88-197, + strand, RNAmicro p=0.989161 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
88-197, + strand, RNAmicro p=0.989161 |
|
79-123, DB471989 RIKEN full-length enriched human cDNA library, hippocampus
(dbj|DB471989.1|), blast E-value=0.0000000000004, identity=97.78% |
|
79-123, UI-1-BB1p-auc-h-05-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone
(gb|BQ025319.1|), blast E-value=0.0000000000004, identity=97.78% |
|
79-123, EST9753 human nasopharynx Homo sapiens cDNA, mRNA sequence
(gb|CD693230.1|), blast E-value=0.0000000000004, identity=97.78% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
79-123, DB471989 RIKEN full-length enriched human cDNA library, hippocampus
(dbj|DB471989.1|), blast E-value=0.0000000000004, identity=97.78% |
|
79-123, UI-1-BB1p-auc-h-05-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone
(gb|BQ025319.1|), blast E-value=0.0000000000004, identity=97.78% |
|
79-123, EST9753 human nasopharynx Homo sapiens cDNA, mRNA sequence
(gb|CD693230.1|), blast E-value=0.0000000000004, identity=97.78% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
