Non-Coding RNA Search

rcbe16_g18.y1

Sequence:


               
               AAAGGACAGCCTACTGTGATTCGTAATCCCGCTCCTGCAACAGTAGGCAGAGCTGCATAA
GACAAAAAGGCTTTGCCCAGCTTCTTGTGAATCACCACTCAAGCATTTAAAAACAGAGTC
TGCTCCTTCAGCGCAAAGCACTCCCGTTAATGTTAATGAAAGTCACACATTTTAACTCAA
AGCCAGAAAGGATGCCTCAATTTTTCCCCAGGAATCCTAGACTATAAAGAACGGAGTTAT
CTGTAACTTCTTTTCTTTTCGTAGTGGTGCAGAATGGAATAATGGCGCATAGGCAGAAGC
TAGCAACATTTAATGTGAAGCTCTTCATTTGTTGACACTAGAAAAATACCTTGGTGTCGG
AGCATAAATGCAAATGCCTCCCTCTGTGCATGGTACTTTCGGGTTTCTCTCTCTCTTTTT
CACTTTGAAGGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGGACAGCCTACTGTGATTCGTAATCCCGCTCCTGCAACAGTAGGCAGAGCTGCATAA
GACAAAAAGGCTTTGCCCAGCTTCTTGTGAATCACCACTCAAGCATTTAAAAACAGAGTC
TGCTCCTTCAGCGCAAAGCACTCCCGTTAATGTTAATGAAAGTCACACATTTTAACTCAA
AGCCAGAAAGGATGCCTCAATTTTTCCCCAGGAATCCTAGACTATAAAGAACGGAGTTAT
CTGTAACTTCTTTTCTTTTCGTAGTGGTGCAGAATGGAATAATGGCGCATAGGCAGAAGC
TAGCAACATTTAATGTGAAGCTCTTCATTTGTTGACACTAGAAAAATACCTTGGTGTCGG
AGCATAAATGCAAATGCCTCCCTCTGTGCATGGTACTTTCGGGTTTCTCTCTCTCTTTTT
CACTTTGAAGGGAAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-436, gnl|bosTau2|chr14 (12180765-12180333)
               

               
               1-436, gnl|canFam2|chr29 (13665416-13665763)
               

               
               1-436, gnl|dasNov1|scaffold_24228 (907-1266)
               

               
               1-436, gnl|hg17|chr8 (61247525-61247887)
               

               
               1-436, gnl|Hg17|chr8 (61247999-61247555)
               

               
               1-436, gnl|loxAfr1|scaffold_19622 (53035-52703)
               

               
               1-436, gnl|mm7|chr4 (8037069-8037442)
               

               
               1-436, gnl|Mm7|chr4 (8037550-8037098)
               

               
               1-436, gnl|oryCun1|scaffold_204243 (4344-4692)
               

               
               1-436, gnl|panTro1|chr7 (63014407-63014769)
               

               
               1-436, gnl|rheMac2|chr8 (62753430-62753795)
               

               
               1-436, gnl|rn3|chr5 (21921091-21921424)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-436, gnl|bosTau2|chr14 (12180765-12180333)
               

               
               1-436, gnl|canFam2|chr29 (13665416-13665763)
               

               
               1-436, gnl|dasNov1|scaffold_24228 (907-1266)
               

               
               1-436, gnl|hg17|chr8 (61247525-61247887)
               

               
               1-436, gnl|Hg17|chr8 (61247999-61247555)
               

               
               1-436, gnl|loxAfr1|scaffold_19622 (53035-52703)
               

               
               1-436, gnl|mm7|chr4 (8037069-8037442)
               

               
               1-436, gnl|Mm7|chr4 (8037550-8037098)
               

               
               1-436, gnl|oryCun1|scaffold_204243 (4344-4692)
               

               
               1-436, gnl|panTro1|chr7 (63014407-63014769)
               

               
               1-436, gnl|rheMac2|chr8 (62753430-62753795)
               

               
               1-436, gnl|rn3|chr5 (21921091-21921424)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbe (0.239234)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)

	1-436, gnl\|bosTau2\|chr14 (12180765-12180333)
	1-436, gnl\|canFam2\|chr29 (13665416-13665763)
	1-436, gnl\|dasNov1\|scaffold_24228 (907-1266)
	1-436, gnl\|hg17\|chr8 (61247525-61247887)
	1-436, gnl\|Hg17\|chr8 (61247999-61247555)
	1-436, gnl\|loxAfr1\|scaffold_19622 (53035-52703)
	1-436, gnl\|mm7\|chr4 (8037069-8037442)
	1-436, gnl\|Mm7\|chr4 (8037550-8037098)
	1-436, gnl\|oryCun1\|scaffold_204243 (4344-4692)
	1-436, gnl\|panTro1\|chr7 (63014407-63014769)
	1-436, gnl\|rheMac2\|chr8 (62753430-62753795)
	1-436, gnl\|rn3\|chr5 (21921091-21921424)