Non-Coding RNA Search

rcbe18_m11.y1

Sequence:


               
               AATATACTTTTCTTGTTATTTTTACAAAGGCCACCTTTATCCTTTTTAATGCCATATTTT
CAGTGTTACACTTTTATGGCTTTTAATTTTCGATTTGACAGATGTAAGAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATACTTTTCTTGTTATTTTTACAAAGGCCACCTTTATCCTTTTTAATGCCATATTTT
CAGTGTTACACTTTTATGGCTTTTAATTTTCGATTTGACAGATGTAAGAAGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               7-113, - strand, RNAz p=0.762119

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-113, - strand, RNAz p=0.762119

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-113, gnl|bosTau2|chr9 (24141273-24141385)
               

               
               1-113, gnl|canFam2|chr12 (67813624-67813892)
               

               
               1-113, gnl|dasNov1|scaffold_93 (162488-162754)
               

               
               1-113, gnl|echTel1|scaffold_314938 (13757-13489)
               

               
               1-113, gnl|galGal2|chr3 (66105108-66104847)
               

               
               1-113, gnl|hg17|chr6 (108086520-108086786)
               

               
               1-113, gnl|Hg17|chr6 (108086700-108086812)
               

               
               1-113, gnl|loxAfr1|scaffold_45674 (9367-9635)
               

               
               1-113, gnl|mm7|chr10 (42814323-42814055)
               

               
               1-113, gnl|Mm7|chr10 (42814140-42814027)
               

               
               1-113, gnl|monDom2|scaffold_0 (113176121-113175854)
               

               
               1-113, gnl|oryCun1|scaffold_193056 (195959-195683)
               

               
               1-113, gnl|panTro1|chr5 (110391137-110391403)
               

               
               1-113, gnl|rheMac2|chr4 (103672549-103672815)
               

               
               1-113, gnl|rn3|chr20_random (529707-529439)
               

               
               1-113, gnl|xenTro1|scaffold_408 (44219-43970)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-113, gnl|bosTau2|chr9 (24141273-24141385)
               

               
               1-113, gnl|canFam2|chr12 (67813624-67813892)
               

               
               1-113, gnl|dasNov1|scaffold_93 (162488-162754)
               

               
               1-113, gnl|echTel1|scaffold_314938 (13757-13489)
               

               
               1-113, gnl|galGal2|chr3 (66105108-66104847)
               

               
               1-113, gnl|hg17|chr6 (108086520-108086786)
               

               
               1-113, gnl|Hg17|chr6 (108086700-108086812)
               

               
               1-113, gnl|loxAfr1|scaffold_45674 (9367-9635)
               

               
               1-113, gnl|mm7|chr10 (42814323-42814055)
               

               
               1-113, gnl|Mm7|chr10 (42814140-42814027)
               

               
               1-113, gnl|monDom2|scaffold_0 (113176121-113175854)
               

               
               1-113, gnl|oryCun1|scaffold_193056 (195959-195683)
               

               
               1-113, gnl|panTro1|chr5 (110391137-110391403)
               

               
               1-113, gnl|rheMac2|chr4 (103672549-103672815)
               

               
               1-113, gnl|rn3|chr20_random (529707-529439)
               

               
               1-113, gnl|xenTro1|scaffold_408 (44219-43970)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbe (0.239234)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)

	1-113, gnl\|bosTau2\|chr9 (24141273-24141385)
	1-113, gnl\|canFam2\|chr12 (67813624-67813892)
	1-113, gnl\|dasNov1\|scaffold_93 (162488-162754)
	1-113, gnl\|echTel1\|scaffold_314938 (13757-13489)
	1-113, gnl\|galGal2\|chr3 (66105108-66104847)
	1-113, gnl\|hg17\|chr6 (108086520-108086786)
	1-113, gnl\|Hg17\|chr6 (108086700-108086812)
	1-113, gnl\|loxAfr1\|scaffold_45674 (9367-9635)
	1-113, gnl\|mm7\|chr10 (42814323-42814055)
	1-113, gnl\|Mm7\|chr10 (42814140-42814027)
	1-113, gnl\|monDom2\|scaffold_0 (113176121-113175854)
	1-113, gnl\|oryCun1\|scaffold_193056 (195959-195683)
	1-113, gnl\|panTro1\|chr5 (110391137-110391403)
	1-113, gnl\|rheMac2\|chr4 (103672549-103672815)
	1-113, gnl\|rn3\|chr20_random (529707-529439)
	1-113, gnl\|xenTro1\|scaffold_408 (44219-43970)