Non-Coding RNA Search

rcbe22_m3.y1

Sequence:


               
               AGATATGTCAAAACTAAGTAGTCACAGTGAAGAATTTCATGAGTCATATGTAATGAACAG
TATTAGAAAAATAGTCTGCTTGAATATTCTCGTTAGTAAAACGTTAACATGCATAATACC
TGTTAGTAATTTTTTCATATTAATCTTGAGAGAAGCTCTGTTTTACTTTAGAATTTTCTG
TGATAAAGTTGTATTTTTAAAAATCCAAAGCCCAGTATATAGAGAATTGTTTTTATTACA
GGTTATGATTAAAAGTTAAAAGTTTGCATAGTTTTAAGAAAACTTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATATGTCAAAACTAAGTAGTCACAGTGAAGAATTTCATGAGTCATATGTAATGAACAG
TATTAGAAAAATAGTCTGCTTGAATATTCTCGTTAGTAAAACGTTAACATGCATAATACC
TGTTAGTAATTTTTTCATATTAATCTTGAGAGAAGCTCTGTTTTACTTTAGAATTTTCTG
TGATAAAGTTGTATTTTTAAAAATCCAAAGCCCAGTATATAGAGAATTGTTTTTATTACA
GGTTATGATTAAAAGTTAAAAGTTTGCATAGTTTTAAGAAAACTTTAC

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               5-144, gnl|bosTau2|chr14 (43842610-43842471)
               

               
               5-144, gnl|canFam2|chr29 (41593162-41593639)
               

               
               5-144, gnl|dasNov1|scaffold_2328 (15165-15627)
               

               
               5-144, gnl|echTel1|scaffold_321231 (88128-87630)
               

               
               5-144, gnl|hg17|chr8 (94788599-94789085)
               

               
               5-144, gnl|Hg17|chr8 (94788880-94789023)
               

               
               5-144, gnl|loxAfr1|scaffold_5527 (36141-36600)
               

               
               5-144, gnl|mm7|chr4 (12093586-12093177)
               

               
               5-144, gnl|Mm7|chr4 (12093339-12093216)
               

               
               5-144, gnl|oryCun1|scaffold_140622 (19192-19629)
               

               
               5-144, gnl|panTro1|chr7 (97015158-97015639)
               

               
               5-144, gnl|rheMac2|chr8 (96281582-96282084)
               

               
               5-144, gnl|rn3|chr5 (26415359-26414959)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-144, gnl|bosTau2|chr14 (43842610-43842471)
               

               
               5-144, gnl|canFam2|chr29 (41593162-41593639)
               

               
               5-144, gnl|dasNov1|scaffold_2328 (15165-15627)
               

               
               5-144, gnl|echTel1|scaffold_321231 (88128-87630)
               

               
               5-144, gnl|hg17|chr8 (94788599-94789085)
               

               
               5-144, gnl|Hg17|chr8 (94788880-94789023)
               

               
               5-144, gnl|loxAfr1|scaffold_5527 (36141-36600)
               

               
               5-144, gnl|mm7|chr4 (12093586-12093177)
               

               
               5-144, gnl|Mm7|chr4 (12093339-12093216)
               

               
               5-144, gnl|oryCun1|scaffold_140622 (19192-19629)
               

               
               5-144, gnl|panTro1|chr7 (97015158-97015639)
               

               
               5-144, gnl|rheMac2|chr8 (96281582-96282084)
               

               
               5-144, gnl|rn3|chr5 (26415359-26414959)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbe (0.239234)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)

	5-144, gnl\|bosTau2\|chr14 (43842610-43842471)
	5-144, gnl\|canFam2\|chr29 (41593162-41593639)
	5-144, gnl\|dasNov1\|scaffold_2328 (15165-15627)
	5-144, gnl\|echTel1\|scaffold_321231 (88128-87630)
	5-144, gnl\|hg17\|chr8 (94788599-94789085)
	5-144, gnl\|Hg17\|chr8 (94788880-94789023)
	5-144, gnl\|loxAfr1\|scaffold_5527 (36141-36600)
	5-144, gnl\|mm7\|chr4 (12093586-12093177)
	5-144, gnl\|Mm7\|chr4 (12093339-12093216)
	5-144, gnl\|oryCun1\|scaffold_140622 (19192-19629)
	5-144, gnl\|panTro1\|chr7 (97015158-97015639)
	5-144, gnl\|rheMac2\|chr8 (96281582-96282084)
	5-144, gnl\|rn3\|chr5 (26415359-26414959)