Non-Coding RNA Search

rcbl0_004057.y1

Sequence:


               
               AGAGTCTGAACGGGCCACAGGGTTCTGTACCCACAGAGGAAAGGACCTCTACAGAGTGAT
CATCATTATGTGGCCAGATGACATTCCTCTCCCCTGACATATGGGCTGGGAATTGGGATG
GCTGTCACCCACTTAGTTCCTAAATTGCTGAAGGTCAAAGAGCATGTCTTCAGACCAGGT
AAAACCTCATCACAGATAGCTAGCGTGGTGCTTTTCTCCCGGTAAGCATTCAGTACAAAG
ATACTAATAGACAATAGAAATGAGGAAGCAAAAGAAAAATCAGGTCATGGCTTGGTTATT
TGTTTAGAATTATATCTTTGCCATATGTACATAATGGCTCCAGTGGGGATATGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTCTGAACGGGCCACAGGGTTCTGTACCCACAGAGGAAAGGACCTCTACAGAGTGAT
CATCATTATGTGGCCAGATGACATTCCTCTCCCCTGACATATGGGCTGGGAATTGGGATG
GCTGTCACCCACTTAGTTCCTAAATTGCTGAAGGTCAAAGAGCATGTCTTCAGACCAGGT
AAAACCTCATCACAGATAGCTAGCGTGGTGCTTTTCTCCCGGTAAGCATTCAGTACAAAG
ATACTAATAGACAATAGAAATGAGGAAGCAAAAGAAAAATCAGGTCATGGCTTGGTTATT
TGTTTAGAATTATATCTTTGCCATATGTACATAATGGCTCCAGTGGGGATATGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-120, + strand, RNAz p=0.805685

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, + strand, RNAz p=0.805685

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-355, gnl|bosTau2|chr2 (66304576-66304930)
               

               
               2-355, gnl|canFam2|chr37 (30850850-30851280)
               

               
               2-355, gnl|dasNov1|scaffold_48805 (8129-7732)
               

               
               2-355, gnl|echTel1|scaffold_323425 (39963-39565)
               

               
               2-355, gnl|hg17|chr2 (222302140-222302572)
               

               
               2-355, gnl|Hg17|chr2 (222302519-222302168)
               

               
               2-355, gnl|loxAfr1|scaffold_198387 (632-202)
               

               
               2-355, gnl|mm7|chr1 (77777363-77777768)
               

               
               2-355, gnl|Mm7|chr1 (77777713-77777384)
               

               
               2-355, gnl|panTro1|chr13_random (29942153-29941728)
               

               
               2-355, gnl|rheMac2|chr12 (85482180-85482612)
               

               
               2-355, gnl|rn3|chr9 (77046908-77047330)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-355, gnl|bosTau2|chr2 (66304576-66304930)
               

               
               2-355, gnl|canFam2|chr37 (30850850-30851280)
               

               
               2-355, gnl|dasNov1|scaffold_48805 (8129-7732)
               

               
               2-355, gnl|echTel1|scaffold_323425 (39963-39565)
               

               
               2-355, gnl|hg17|chr2 (222302140-222302572)
               

               
               2-355, gnl|Hg17|chr2 (222302519-222302168)
               

               
               2-355, gnl|loxAfr1|scaffold_198387 (632-202)
               

               
               2-355, gnl|mm7|chr1 (77777363-77777768)
               

               
               2-355, gnl|Mm7|chr1 (77777713-77777384)
               

               
               2-355, gnl|panTro1|chr13_random (29942153-29941728)
               

               
               2-355, gnl|rheMac2|chr12 (85482180-85482612)
               

               
               2-355, gnl|rn3|chr9 (77046908-77047330)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	2-355, gnl\|bosTau2\|chr2 (66304576-66304930)
	2-355, gnl\|canFam2\|chr37 (30850850-30851280)
	2-355, gnl\|dasNov1\|scaffold_48805 (8129-7732)
	2-355, gnl\|echTel1\|scaffold_323425 (39963-39565)
	2-355, gnl\|hg17\|chr2 (222302140-222302572)
	2-355, gnl\|Hg17\|chr2 (222302519-222302168)
	2-355, gnl\|loxAfr1\|scaffold_198387 (632-202)
	2-355, gnl\|mm7\|chr1 (77777363-77777768)
	2-355, gnl\|Mm7\|chr1 (77777713-77777384)
	2-355, gnl\|panTro1\|chr13_random (29942153-29941728)
	2-355, gnl\|rheMac2\|chr12 (85482180-85482612)
	2-355, gnl\|rn3\|chr9 (77046908-77047330)