Non-Coding RNA Search

rcbl0_004095.y1

Sequence:


               
               CCATAAGCCATGTCAAGTTATGCATTTCTCGGAGGAACCAGCAGGGATCCCAAGCAAAGA
GGACAGAAGGACAGAACATGAAACTCCAAGGAATTACTTTATTAAGCAAAAGCAGGAGGA
CCTGGGGGAAATGGTGTATGCCTTCCCCCCTTGCAATGCAGACACTTTCTTACAACCGCC
TATCATCTTGAACTGACCACCGAGGCATCGAAAATTCAAATGAGAGCTGGGCTGGTAAGG
AAAGCTGCTTGGTTTTATGGCATATCTTACTTGCTTAGAGGCAAAATCTGTTGCTGCATT
TGGACTCCTGAGAGGACGGGCTGCAGCTCTTGCTTCAGGATCTAAGATGTGACCATTTGA
AGCAAAGAAAGAAACACTCGGTCTCCTTCAGTGAAAATAAAACACTGCAGGTCGGTAAGT
TCTAAGAACAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATAAGCCATGTCAAGTTATGCATTTCTCGGAGGAACCAGCAGGGATCCCAAGCAAAGA
GGACAGAAGGACAGAACATGAAACTCCAAGGAATTACTTTATTAAGCAAAAGCAGGAGGA
CCTGGGGGAAATGGTGTATGCCTTCCCCCCTTGCAATGCAGACACTTTCTTACAACCGCC
TATCATCTTGAACTGACCACCGAGGCATCGAAAATTCAAATGAGAGCTGGGCTGGTAAGG
AAAGCTGCTTGGTTTTATGGCATATCTTACTTGCTTAGAGGCAAAATCTGTTGCTGCATT
TGGACTCCTGAGAGGACGGGCTGCAGCTCTTGCTTCAGGATCTAAGATGTGACCATTTGA
AGCAAAGAAAGAAACACTCGGTCTCCTTCAGTGAAAATAAAACACTGCAGGTCGGTAAGT
TCTAAGAACAGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               285-398, - strand, RNAz p=0.974105

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               285-398, - strand, RNAz p=0.974105

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               88-429, gnl|bosTau2|chr6 (21549705-21549367)
               

               
               88-429, gnl|canFam2|chr3 (88762732-88762299)
               

               
               88-429, gnl|dasNov1|scaffold_1275 (118688-119103)
               

               
               88-429, gnl|echTel1|scaffold_277072 (77467-77833)
               

               
               88-429, gnl|hg17|chr4 (23819358-23819792)
               

               
               88-429, gnl|Hg17|chr4 (23819440-23819781)
               

               
               88-429, gnl|loxAfr1|scaffold_40048 (1226-816)
               

               
               88-429, gnl|mm7|chr5 (51176266-51176669)
               

               
               88-429, gnl|Mm7|chr5 (51176336-51176658)
               

               
               88-429, gnl|monDom2|scaffold_10 (14829841-14829389)
               

               
               88-429, gnl|panTro1|chr3 (24367388-24367822)
               

               
               88-429, gnl|rheMac2|chr5 (18901432-18901867)
               

               
               88-429, gnl|rn3|chr14 (64025042-64024639)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-429, gnl|bosTau2|chr6 (21549705-21549367)
               

               
               88-429, gnl|canFam2|chr3 (88762732-88762299)
               

               
               88-429, gnl|dasNov1|scaffold_1275 (118688-119103)
               

               
               88-429, gnl|echTel1|scaffold_277072 (77467-77833)
               

               
               88-429, gnl|hg17|chr4 (23819358-23819792)
               

               
               88-429, gnl|Hg17|chr4 (23819440-23819781)
               

               
               88-429, gnl|loxAfr1|scaffold_40048 (1226-816)
               

               
               88-429, gnl|mm7|chr5 (51176266-51176669)
               

               
               88-429, gnl|Mm7|chr5 (51176336-51176658)
               

               
               88-429, gnl|monDom2|scaffold_10 (14829841-14829389)
               

               
               88-429, gnl|panTro1|chr3 (24367388-24367822)
               

               
               88-429, gnl|rheMac2|chr5 (18901432-18901867)
               

               
               88-429, gnl|rn3|chr14 (64025042-64024639)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	88-429, gnl\|bosTau2\|chr6 (21549705-21549367)
	88-429, gnl\|canFam2\|chr3 (88762732-88762299)
	88-429, gnl\|dasNov1\|scaffold_1275 (118688-119103)
	88-429, gnl\|echTel1\|scaffold_277072 (77467-77833)
	88-429, gnl\|hg17\|chr4 (23819358-23819792)
	88-429, gnl\|Hg17\|chr4 (23819440-23819781)
	88-429, gnl\|loxAfr1\|scaffold_40048 (1226-816)
	88-429, gnl\|mm7\|chr5 (51176266-51176669)
	88-429, gnl\|Mm7\|chr5 (51176336-51176658)
	88-429, gnl\|monDom2\|scaffold_10 (14829841-14829389)
	88-429, gnl\|panTro1\|chr3 (24367388-24367822)
	88-429, gnl\|rheMac2\|chr5 (18901432-18901867)
	88-429, gnl\|rn3\|chr14 (64025042-64024639)