Non-Coding RNA Search

rcbl0_004462.y1

Sequence:


               
               GATGGTGCTGAATTGATCGGATTGGGAAAGGCTGCCCATAATGTGCTATACTATGCTAAA
ACCACAATTAAGTAAGACTTTGGGCTGCCTCTTGTGTCTTAACTGGTTCTGCAACTTGTC
CTTTAGCCCACAGAGGGCATATTTCATGGACTGCTCGTTTTCTCTGGGGACTCTTTAACT
TTAGAGCCATTTTTTTCCCTTCCAGCTGACGAACTTTGTGTTTGAAAGGAATAAGGAGTG
AAAGTCTCCTTTCAAATCCAGGCGGGTATGGAAAGGTGCTGCTACCCATATCTTGTTGAC
TTTCTTTCTCTCATGACTTTCTTTAGCTCATGGCATCTCCTTTGCAGTAAAAGGAGACCA
ACCTTTAGTTTCAGTATCTGTGATTTATAAGTACTGAGCATGAGTTACTGATCCACCCCT
CTTCATTTCAAGGCCAGAATTATTTTCTATTATATATTTAGTCTAGACTGATCCTTTGGG
GCACAATAGAAACCATGGGGCATGGAGCATGAGTTGTGAATGGCAGGGTTGATTCTGGGT
G

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGTGCTGAATTGATCGGATTGGGAAAGGCTGCCCATAATGTGCTATACTATGCTAAA
ACCACAATTAAGTAAGACTTTGGGCTGCCTCTTGTGTCTTAACTGGTTCTGCAACTTGTC
CTTTAGCCCACAGAGGGCATATTTCATGGACTGCTCGTTTTCTCTGGGGACTCTTTAACT
TTAGAGCCATTTTTTTCCCTTCCAGCTGACGAACTTTGTGTTTGAAAGGAATAAGGAGTG
AAAGTCTCCTTTCAAATCCAGGCGGGTATGGAAAGGTGCTGCTACCCATATCTTGTTGAC
TTTCTTTCTCTCATGACTTTCTTTAGCTCATGGCATCTCCTTTGCAGTAAAAGGAGACCA
ACCTTTAGTTTCAGTATCTGTGATTTATAAGTACTGAGCATGAGTTACTGATCCACCCCT
CTTCATTTCAAGGCCAGAATTATTTTCTATTATATATTTAGTCTAGACTGATCCTTTGGG
GCACAATAGAAACCATGGGGCATGGAGCATGAGTTGTGAATGGCAGGGTTGATTCTGGGT
G

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               232-349, - strand, RNAz p=0.540652

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-349, - strand, RNAz p=0.540652

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-541, gnl|bosTau2|chr15 (8260352-8259813)
               

               
               1-541, gnl|Hg17|chr11 (111395521-111396061)
               

               
               1-541, gnl|Mm7|chr9 (50644279-50643798)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-541, gnl|bosTau2|chr15 (8260352-8259813)
               

               
               1-541, gnl|Hg17|chr11 (111395521-111396061)
               

               
               1-541, gnl|Mm7|chr9 (50644279-50643798)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	1-541, gnl\|bosTau2\|chr15 (8260352-8259813)
	1-541, gnl\|Hg17\|chr11 (111395521-111396061)
	1-541, gnl\|Mm7\|chr9 (50644279-50643798)