Non-Coding RNA Search

rcbl0_004925.y1

Sequence:


               
               CTATTTTTCTAACCTCGTATAAATTTTTGTCTCTGTAATTCTATTTTAGAGAAAATCAGG
ATACAAATTAATTAACAAAAATGTTATTTTTCTATCTCTTACTTCCTCTCTTCCATTCTT
GGACCTATTCTGGGCTTTAGTCATTTCCCTCTTCTCAGTAGAATTCTGCTTTCTCAGATG
TAAAGATTATTATTTTTTTTGACAGAAAGTAAACAATCAGGAGATAAAGAAAAAAATGCT
TAAATTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATTTTTCTAACCTCGTATAAATTTTTGTCTCTGTAATTCTATTTTAGAGAAAATCAGG
ATACAAATTAATTAACAAAAATGTTATTTTTCTATCTCTTACTTCCTCTCTTCCATTCTT
GGACCTATTCTGGGCTTTAGTCATTTCCCTCTTCTCAGTAGAATTCTGCTTTCTCAGATG
TAAAGATTATTATTTTTTTTGACAGAAAGTAAACAATCAGGAGATAAAGAAAAAAATGCT
TAAATTAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               24-122, - strand, RNAz p=0.712193

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               24-122, - strand, RNAz p=0.712193

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-248, gnl|bosTau2|chr5 (36462330-36462067)
               

               
               1-248, gnl|canFam2|chr15 (40356120-40356850)
               

               
               1-248, gnl|dasNov1|scaffold_48 (110161-109414)
               

               
               1-248, gnl|echTel1|scaffold_215815 (6640-7288)
               

               
               1-248, gnl|hg17|chr12 (96698151-96698861)
               

               
               1-248, gnl|Hg17|chr12 (96698724-96698468)
               

               
               1-248, gnl|loxAfr1|scaffold_9474 (50376-49697)
               

               
               1-248, gnl|mm7|chr10 (91444106-91443443)
               

               
               1-248, gnl|Mm7|chr10 (91443572-91443822)
               

               
               1-248, gnl|oryCun1|scaffold_198235 (78167-77502)
               

               
               1-248, gnl|panTro1|chr10 (99126533-99127243)
               

               
               1-248, gnl|rheMac2|chr11 (98991289-98992000)
               

               
               1-248, gnl|rn3|chr7 (28896088-28895418)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-248, gnl|bosTau2|chr5 (36462330-36462067)
               

               
               1-248, gnl|canFam2|chr15 (40356120-40356850)
               

               
               1-248, gnl|dasNov1|scaffold_48 (110161-109414)
               

               
               1-248, gnl|echTel1|scaffold_215815 (6640-7288)
               

               
               1-248, gnl|hg17|chr12 (96698151-96698861)
               

               
               1-248, gnl|Hg17|chr12 (96698724-96698468)
               

               
               1-248, gnl|loxAfr1|scaffold_9474 (50376-49697)
               

               
               1-248, gnl|mm7|chr10 (91444106-91443443)
               

               
               1-248, gnl|Mm7|chr10 (91443572-91443822)
               

               
               1-248, gnl|oryCun1|scaffold_198235 (78167-77502)
               

               
               1-248, gnl|panTro1|chr10 (99126533-99127243)
               

               
               1-248, gnl|rheMac2|chr11 (98991289-98992000)
               

               
               1-248, gnl|rn3|chr7 (28896088-28895418)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	1-248, gnl\|bosTau2\|chr5 (36462330-36462067)
	1-248, gnl\|canFam2\|chr15 (40356120-40356850)
	1-248, gnl\|dasNov1\|scaffold_48 (110161-109414)
	1-248, gnl\|echTel1\|scaffold_215815 (6640-7288)
	1-248, gnl\|hg17\|chr12 (96698151-96698861)
	1-248, gnl\|Hg17\|chr12 (96698724-96698468)
	1-248, gnl\|loxAfr1\|scaffold_9474 (50376-49697)
	1-248, gnl\|mm7\|chr10 (91444106-91443443)
	1-248, gnl\|Mm7\|chr10 (91443572-91443822)
	1-248, gnl\|oryCun1\|scaffold_198235 (78167-77502)
	1-248, gnl\|panTro1\|chr10 (99126533-99127243)
	1-248, gnl\|rheMac2\|chr11 (98991289-98992000)
	1-248, gnl\|rn3\|chr7 (28896088-28895418)