Non-Coding RNA Search

rcbl0_005274.y1

Sequence:


               
               CAAGACTGCTATTGGGGAGGGGGCTGCAATTCTCTTATATTCTTGTTGTAGCTCCTTTCG
CCTAGAAAGAGCCCTGTAGAAGAAATACACTCCCAAACAATGAATCCTGAAGAGGTAATT
ACACTGTTGCCGTCCCATTGGGAAGAAGGCTGGGGCGGTGATTACATTCCAAAACAAAGC
TGTTTGGGTATAATTGCACTGTGCTGCTCTTATCAGTCTGGAGAAGGCAGGCCTCTGGTC
TCCATCCTCATTTGTTTTTGAGATGGAATCCGAATAGCATTCAATTAATAGGCAAGACCC
AGGCACAGGGAAGTCAGCCAAAAGAGCCAAGAGGACATTAACTTTCTGTTGGCATTTTCC
TTCCGCTGAAGTTTTCCAGACCTTTAAGTATCAGCAAATTTGAGGGAGAGCCCATTTGAG
GAAATGTATTTGGCCAATGAAGGGTTAGAGAGCCCTCCTTAGATGCTGTGCCCCAAAGCC
TTCATTGGTCTTTATACATAAAGAAAAGATGGTTGGATGGCAATGAAATTTCCCTCCTCC
ATCAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGACTGCTATTGGGGAGGGGGCTGCAATTCTCTTATATTCTTGTTGTAGCTCCTTTCG
CCTAGAAAGAGCCCTGTAGAAGAAATACACTCCCAAACAATGAATCCTGAAGAGGTAATT
ACACTGTTGCCGTCCCATTGGGAAGAAGGCTGGGGCGGTGATTACATTCCAAAACAAAGC
TGTTTGGGTATAATTGCACTGTGCTGCTCTTATCAGTCTGGAGAAGGCAGGCCTCTGGTC
TCCATCCTCATTTGTTTTTGAGATGGAATCCGAATAGCATTCAATTAATAGGCAAGACCC
AGGCACAGGGAAGTCAGCCAAAAGAGCCAAGAGGACATTAACTTTCTGTTGGCATTTTCC
TTCCGCTGAAGTTTTCCAGACCTTTAAGTATCAGCAAATTTGAGGGAGAGCCCATTTGAG
GAAATGTATTTGGCCAATGAAGGGTTAGAGAGCCCTCCTTAGATGCTGTGCCCCAAAGCC
TTCATTGGTCTTTATACATAAAGAAAAGATGGTTGGATGGCAATGAAATTTCCCTCCTCC
ATCAAGCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               77-276, - strand, RNAz p=0.939295
               

               
               397-535, + strand, RNAz p=0.933855

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-276, - strand, RNAz p=0.939295
               

               
               397-535, + strand, RNAz p=0.933855

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               287-419, - strand, RNAmicro p=0.985825

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               287-419, - strand, RNAmicro p=0.985825

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-535, gnl|bosTau2|chr15 (48316939-48316411)
               

               
               5-535, gnl|Hg17|chr11 (46459493-46458960)
               

               
               5-535, gnl|Mm7|chr2 (91691776-91692297)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-535, gnl|bosTau2|chr15 (48316939-48316411)
               

               
               5-535, gnl|Hg17|chr11 (46459493-46458960)
               

               
               5-535, gnl|Mm7|chr2 (91691776-91692297)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	77-276, - strand, RNAz p=0.939295
	397-535, + strand, RNAz p=0.933855

	5-535, gnl\|bosTau2\|chr15 (48316939-48316411)
	5-535, gnl\|Hg17\|chr11 (46459493-46458960)
	5-535, gnl\|Mm7\|chr2 (91691776-91692297)