Non-Coding RNA Search

rcbl0_005496.y1

Sequence:


               
               AGCAAAAAAATGGTTGCTTGGGACTGTCTGACTAGCACACTGTATATTGTACTGATGAGA
CTGTTAACTTGAACAGGAGGTAGAATGCTGTCTTCAAATGGAAAAGGACTATGTTGCGCT
GCTTTATCTTGTCAGAAGACTAGGCAGGTGATTTTGGTTTGGCCTCCAAGTATTTGCTGT
TAATTACCTCTTATTTATTGCCTATGGAGTTGGTTAAGTGGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAAAAAAATGGTTGCTTGGGACTGTCTGACTAGCACACTGTATATTGTACTGATGAGA
CTGTTAACTTGAACAGGAGGTAGAATGCTGTCTTCAAATGGAAAAGGACTATGTTGCGCT
GCTTTATCTTGTCAGAAGACTAGGCAGGTGATTTTGGTTTGGCCTCCAAGTATTTGCTGT
TAATTACCTCTTATTTATTGCCTATGGAGTTGGTTAAGTGGTGT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               4-195, gnl|bosTau2|chr26 (16659938-16659747)
               

               
               4-195, gnl|canFam2|chr28 (17382163-17382696)
               

               
               4-195, gnl|echTel1|scaffold_311022 (2409-2900)
               

               
               4-195, gnl|galGal2|chr6 (21799646-21799120)
               

               
               4-195, gnl|hg17|chr10 (103544255-103544770)
               

               
               4-195, gnl|Hg17|chr10 (103544736-103544570)
               

               
               4-195, gnl|loxAfr1|scaffold_58414 (29947-29431)
               

               
               4-195, gnl|mm7|chr19 (45659656-45660158)
               

               
               4-195, gnl|Mm7|chr19 (45660124-45659957)
               

               
               4-195, gnl|monDom2|scaffold_14 (61679851-61679343)
               

               
               4-195, gnl|oryCun1|scaffold_194907 (1924-2434)
               

               
               4-195, gnl|panTro1|chr8 (105300704-105301219)
               

               
               4-195, gnl|rheMac2|chr9 (101429891-101430399)
               

               
               4-195, gnl|rn3|chr1 (251238843-251239337)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-195, gnl|bosTau2|chr26 (16659938-16659747)
               

               
               4-195, gnl|canFam2|chr28 (17382163-17382696)
               

               
               4-195, gnl|echTel1|scaffold_311022 (2409-2900)
               

               
               4-195, gnl|galGal2|chr6 (21799646-21799120)
               

               
               4-195, gnl|hg17|chr10 (103544255-103544770)
               

               
               4-195, gnl|Hg17|chr10 (103544736-103544570)
               

               
               4-195, gnl|loxAfr1|scaffold_58414 (29947-29431)
               

               
               4-195, gnl|mm7|chr19 (45659656-45660158)
               

               
               4-195, gnl|Mm7|chr19 (45660124-45659957)
               

               
               4-195, gnl|monDom2|scaffold_14 (61679851-61679343)
               

               
               4-195, gnl|oryCun1|scaffold_194907 (1924-2434)
               

               
               4-195, gnl|panTro1|chr8 (105300704-105301219)
               

               
               4-195, gnl|rheMac2|chr9 (101429891-101430399)
               

               
               4-195, gnl|rn3|chr1 (251238843-251239337)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	4-195, gnl\|bosTau2\|chr26 (16659938-16659747)
	4-195, gnl\|canFam2\|chr28 (17382163-17382696)
	4-195, gnl\|echTel1\|scaffold_311022 (2409-2900)
	4-195, gnl\|galGal2\|chr6 (21799646-21799120)
	4-195, gnl\|hg17\|chr10 (103544255-103544770)
	4-195, gnl\|Hg17\|chr10 (103544736-103544570)
	4-195, gnl\|loxAfr1\|scaffold_58414 (29947-29431)
	4-195, gnl\|mm7\|chr19 (45659656-45660158)
	4-195, gnl\|Mm7\|chr19 (45660124-45659957)
	4-195, gnl\|monDom2\|scaffold_14 (61679851-61679343)
	4-195, gnl\|oryCun1\|scaffold_194907 (1924-2434)
	4-195, gnl\|panTro1\|chr8 (105300704-105301219)
	4-195, gnl\|rheMac2\|chr9 (101429891-101430399)
	4-195, gnl\|rn3\|chr1 (251238843-251239337)