Non-Coding RNA Search

rcbl0_008703.y1

Sequence:


               
               CAAGAAAGGCTTCCGCGAGTTCTCTAGACTTTTTACTAAGGTGTGTCACTAATGCCCGTA
GGTTGCTGAGCCCCCGAGAAGCGCAGTAGCATCTCGGCCTGACTGTGCGTTGGCCAGCGG
AGAGGGAGGTGGCCAGTGATCGTGTTCCGTGTTGCTAGCTCTGGTAAATAGAAACTGCTG
GTAAGATTTTGGTCTTGTCAGTACACTAGAGAGTAAGTTTTGTTTTGTTGTTTCTAGAGA
ATCAGTTTTCACTGCTATTTGGGAAAACATTTCCATTCAATTTCAGTCCTGAATTTTGCC
AGCTGTGGTCATTAACAGTTTCTATCAGGTATTTTTAAGGTAGATGAGGACAGAAACCGA
AGTCCTGACCTAATCTTATAGAAACAGTGGTTTATTTACAGCAGTTAGGGGTGGTTAGTC
TCTACCTCAGAAAAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGAAAGGCTTCCGCGAGTTCTCTAGACTTTTTACTAAGGTGTGTCACTAATGCCCGTA
GGTTGCTGAGCCCCCGAGAAGCGCAGTAGCATCTCGGCCTGACTGTGCGTTGGCCAGCGG
AGAGGGAGGTGGCCAGTGATCGTGTTCCGTGTTGCTAGCTCTGGTAAATAGAAACTGCTG
GTAAGATTTTGGTCTTGTCAGTACACTAGAGAGTAAGTTTTGTTTTGTTGTTTCTAGAGA
ATCAGTTTTCACTGCTATTTGGGAAAACATTTCCATTCAATTTCAGTCCTGAATTTTGCC
AGCTGTGGTCATTAACAGTTTCTATCAGGTATTTTTAAGGTAGATGAGGACAGAAACCGA
AGTCCTGACCTAATCTTATAGAAACAGTGGTTTATTTACAGCAGTTAGGGGTGGTTAGTC
TCTACCTCAGAAAAGTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               102-214, + strand, RNAz p=0.668125

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               102-214, + strand, RNAz p=0.668125

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-438, gnl|bosTau2|chr27 (12081210-12080773)
               

               
               1-438, gnl|Hg17|chr7 (139874721-139874249)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-438, gnl|bosTau2|chr27 (12081210-12080773)
               

               
               1-438, gnl|Hg17|chr7 (139874721-139874249)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	1-438, gnl\|bosTau2\|chr27 (12081210-12080773)
	1-438, gnl\|Hg17\|chr7 (139874721-139874249)