Non-Coding RNA Search

rcbl0_015791.y1

Sequence:


               
               CTTTGATGGCATTCTCTCCTTTTATTATAATCCTTAAAATAATTTCTACCTCTCACAGAT
GGTAGGACTTTTCTCCACCAGTTGAAGCTACTGTGGATAAGTGATTTTGTTGAAATTCTC
CCTATATTACTCAGTACTTTTCATACTAACATAACACTTAGCAAAATTAAATATGATCTG
GGAGTTCCTGCAGCGGCCAACAGGGCCGGCAGTGTCTGCAGTGCCAGTACCTGTGTTTGA
TCCCAGACTTAGCACAGTAGGTTAAAGGATCTGGAACTGTGGTTCAGATCTGATCCCTGG
CCCCTGCCCTGGGAACTCTGCCGTGGGCCAGCCAAAAAAGAAAGAAATCTGAATATAAGG
AACGTTGACGTAAAAAAGTAAAGTAGACAATACCTTCTCATACATGCACCTGCCCTTCAA
GGACCTAGTGTAGGTAGATATATATCATCAGGAAAGCAATTTCTTTCTTTCTTTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGATGGCATTCTCTCCTTTTATTATAATCCTTAAAATAATTTCTACCTCTCACAGAT
GGTAGGACTTTTCTCCACCAGTTGAAGCTACTGTGGATAAGTGATTTTGTTGAAATTCTC
CCTATATTACTCAGTACTTTTCATACTAACATAACACTTAGCAAAATTAAATATGATCTG
GGAGTTCCTGCAGCGGCCAACAGGGCCGGCAGTGTCTGCAGTGCCAGTACCTGTGTTTGA
TCCCAGACTTAGCACAGTAGGTTAAAGGATCTGGAACTGTGGTTCAGATCTGATCCCTGG
CCCCTGCCCTGGGAACTCTGCCGTGGGCCAGCCAAAAAAGAAAGAAATCTGAATATAAGG
AACGTTGACGTAAAAAAGTAAAGTAGACAATACCTTCTCATACATGCACCTGCCCTTCAA
GGACCTAGTGTAGGTAGATATATATCATCAGGAAAGCAATTTCTTTCTTTCTTTCTTT

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-174, gnl|bosTau2|chr14 (20860018-20860190)
               

               
               1-174, gnl|canFam2|chr29 (25330736-25331250)
               

               
               1-174, gnl|dasNov1|scaffold_17677 (11798-12386)
               

               
               1-174, gnl|echTel1|scaffold_267021 (8253-7742)
               

               
               1-174, gnl|hg17|chr8 (74862051-74862625)
               

               
               1-174, gnl|Hg17|chr8 (74862238-74862069)
               

               
               1-174, gnl|loxAfr1|scaffold_20178 (11782-11209)
               

               
               1-174, gnl|mm7|chr1 (16753953-16754434)
               

               
               1-174, gnl|Mm7|chr1 (16754127-16753971)
               

               
               1-174, gnl|oryCun1|scaffold_98786 (4273-4817)
               

               
               1-174, gnl|panTro1|chr7 (76900233-76900807)
               

               
               1-174, gnl|rheMac2|chr8 (76297401-76297988)
               

               
               1-174, gnl|rn3|chr5 (1875309-1875839)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-174, gnl|bosTau2|chr14 (20860018-20860190)
               

               
               1-174, gnl|canFam2|chr29 (25330736-25331250)
               

               
               1-174, gnl|dasNov1|scaffold_17677 (11798-12386)
               

               
               1-174, gnl|echTel1|scaffold_267021 (8253-7742)
               

               
               1-174, gnl|hg17|chr8 (74862051-74862625)
               

               
               1-174, gnl|Hg17|chr8 (74862238-74862069)
               

               
               1-174, gnl|loxAfr1|scaffold_20178 (11782-11209)
               

               
               1-174, gnl|mm7|chr1 (16753953-16754434)
               

               
               1-174, gnl|Mm7|chr1 (16754127-16753971)
               

               
               1-174, gnl|oryCun1|scaffold_98786 (4273-4817)
               

               
               1-174, gnl|panTro1|chr7 (76900233-76900807)
               

               
               1-174, gnl|rheMac2|chr8 (76297401-76297988)
               

               
               1-174, gnl|rn3|chr5 (1875309-1875839)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	1-174, gnl\|bosTau2\|chr14 (20860018-20860190)
	1-174, gnl\|canFam2\|chr29 (25330736-25331250)
	1-174, gnl\|dasNov1\|scaffold_17677 (11798-12386)
	1-174, gnl\|echTel1\|scaffold_267021 (8253-7742)
	1-174, gnl\|hg17\|chr8 (74862051-74862625)
	1-174, gnl\|Hg17\|chr8 (74862238-74862069)
	1-174, gnl\|loxAfr1\|scaffold_20178 (11782-11209)
	1-174, gnl\|mm7\|chr1 (16753953-16754434)
	1-174, gnl\|Mm7\|chr1 (16754127-16753971)
	1-174, gnl\|oryCun1\|scaffold_98786 (4273-4817)
	1-174, gnl\|panTro1\|chr7 (76900233-76900807)
	1-174, gnl\|rheMac2\|chr8 (76297401-76297988)
	1-174, gnl\|rn3\|chr5 (1875309-1875839)