Non-Coding RNA Search

rcbl0_017442.y1

Sequence:


               
               GTTAAGGTATCTTTTCATTCTAAGTCTGATTTTCAGTTCTTTATCACTTTCCTCGGAAAG
TTTTACTTTTAGCAGCAGTGTTTAAAGGTGAATAAAAAAGTCTTTTGATCATTTAAAAAG
GATGAGATTGTAATAGAGGATTATGGATACATTTCCAAAGGCGACTGGTATAATTGGATT
CACACTGTGAGGGCATCCTTGCTTAGACACTTAGGTTAGTGGGAGTTAAGATCTTTTAAT
CCTAGTTCCAGGTAGAGGGGTGTGATAGAGTCTATGAGTTAGTTTTTTTGGTGGGTAAAA
CAAATGTTCTTTAGAATGTAGAAGAGCACTGTGTGCTATGCCAGTCCTTTTCCACATTTC
CTGTCTTTCTTTCTTTCTTTTTTTCCTTTGGTGCTTAATTTTTGCCCACAGTTGCCGTCA
GTTTAGAGCTACCCTCCAAAGGTTCTAACGTGTTAGCTATTAGTATCGTAATCTTCATTG
GTAATGGTTTATAAGGATAAGGACGTCTAAGAGATTTTTCTTATCATTGTGAATTAAAAG
AATAAGGAAGCTTCACAGTGCATAGATCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAAGGTATCTTTTCATTCTAAGTCTGATTTTCAGTTCTTTATCACTTTCCTCGGAAAG
TTTTACTTTTAGCAGCAGTGTTTAAAGGTGAATAAAAAAGTCTTTTGATCATTTAAAAAG
GATGAGATTGTAATAGAGGATTATGGATACATTTCCAAAGGCGACTGGTATAATTGGATT
CACACTGTGAGGGCATCCTTGCTTAGACACTTAGGTTAGTGGGAGTTAAGATCTTTTAAT
CCTAGTTCCAGGTAGAGGGGTGTGATAGAGTCTATGAGTTAGTTTTTTTGGTGGGTAAAA
CAAATGTTCTTTAGAATGTAGAAGAGCACTGTGTGCTATGCCAGTCCTTTTCCACATTTC
CTGTCTTTCTTTCTTTCTTTTTTTCCTTTGGTGCTTAATTTTTGCCCACAGTTGCCGTCA
GTTTAGAGCTACCCTCCAAAGGTTCTAACGTGTTAGCTATTAGTATCGTAATCTTCATTG
GTAATGGTTTATAAGGATAAGGACGTCTAAGAGATTTTTCTTATCATTGTGAATTAAAAG
AATAAGGAAGCTTCACAGTGCATAGATCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               281-389, - strand, RNAz p=0.9169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-389, - strand, RNAz p=0.9169

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               4-570, gnl|bosTau2|chr11 (12043064-12042488)
               

               
               4-570, gnl|canFam2|chr17 (28358606-28359283)
               

               
               4-570, gnl|dasNov1|scaffold_7727 (11914-11227)
               

               
               4-570, gnl|hg17|chr2 (32027846-32028529)
               

               
               4-570, gnl|Hg17|chr2 (32028660-32028096)
               

               
               4-570, gnl|mm7|chr17 (72513209-72513846)
               

               
               4-570, gnl|Mm7|chr17 (72513969-72513442)
               

               
               4-570, gnl|monDom2|scaffold_1 (142359246-142358569)
               

               
               4-570, gnl|oryCun1|scaffold_103489 (17141-16435)
               

               
               4-570, gnl|panTro1|chr12_random (14823743-14824431)
               

               
               4-570, gnl|rheMac2|chr13 (31927868-31928555)
               

               
               4-570, gnl|rn3|chr6 (21181353-21180708)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-570, gnl|bosTau2|chr11 (12043064-12042488)
               

               
               4-570, gnl|canFam2|chr17 (28358606-28359283)
               

               
               4-570, gnl|dasNov1|scaffold_7727 (11914-11227)
               

               
               4-570, gnl|hg17|chr2 (32027846-32028529)
               

               
               4-570, gnl|Hg17|chr2 (32028660-32028096)
               

               
               4-570, gnl|mm7|chr17 (72513209-72513846)
               

               
               4-570, gnl|Mm7|chr17 (72513969-72513442)
               

               
               4-570, gnl|monDom2|scaffold_1 (142359246-142358569)
               

               
               4-570, gnl|oryCun1|scaffold_103489 (17141-16435)
               

               
               4-570, gnl|panTro1|chr12_random (14823743-14824431)
               

               
               4-570, gnl|rheMac2|chr13 (31927868-31928555)
               

               
               4-570, gnl|rn3|chr6 (21181353-21180708)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	4-570, gnl\|bosTau2\|chr11 (12043064-12042488)
	4-570, gnl\|canFam2\|chr17 (28358606-28359283)
	4-570, gnl\|dasNov1\|scaffold_7727 (11914-11227)
	4-570, gnl\|hg17\|chr2 (32027846-32028529)
	4-570, gnl\|Hg17\|chr2 (32028660-32028096)
	4-570, gnl\|mm7\|chr17 (72513209-72513846)
	4-570, gnl\|Mm7\|chr17 (72513969-72513442)
	4-570, gnl\|monDom2\|scaffold_1 (142359246-142358569)
	4-570, gnl\|oryCun1\|scaffold_103489 (17141-16435)
	4-570, gnl\|panTro1\|chr12_random (14823743-14824431)
	4-570, gnl\|rheMac2\|chr13 (31927868-31928555)
	4-570, gnl\|rn3\|chr6 (21181353-21180708)