Non-Coding RNA Search

rcbl0_018133.y1

Sequence:


               
               TGCCTGTCCTGCTTATCGGGTATTTCCTCATGGTATCAAAGACGAAGCAGAATGAGGCTC
TTGTACGAATGCTACTTGAAGCTGGTGTTGAAGTTAATGCTACAGATTGCTATGGCTGCA
CTGCGCTGCATTACGCCTGTGAAATGAAAAACCAGACTCTCATCCCTCTGCTGCTTAAAG
CCCATGCAGACCCCAGGATAAAGAATAAGCATGGTGAGAGTTCCCTGGATATTGCACGGA
GATTAAAATTTTCCCAGATTGAATTAATGCTCAGGAAAGCAACCTAATCTTTGTGGCCTC
ATCTGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTGTCCTGCTTATCGGGTATTTCCTCATGGTATCAAAGACGAAGCAGAATGAGGCTC
TTGTACGAATGCTACTTGAAGCTGGTGTTGAAGTTAATGCTACAGATTGCTATGGCTGCA
CTGCGCTGCATTACGCCTGTGAAATGAAAAACCAGACTCTCATCCCTCTGCTGCTTAAAG
CCCATGCAGACCCCAGGATAAAGAATAAGCATGGTGAGAGTTCCCTGGATATTGCACGGA
GATTAAAATTTTCCCAGATTGAATTAATGCTCAGGAAAGCAACCTAATCTTTGTGGCCTC
ATCTGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61840683|ref|XP_581206.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61840683|ref|XP_581206.1|

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               208-308, gnl|bosTau2|chr26 (35709820-35709720)
               

               
               208-308, gnl|canFam2|chr26 (41692304-41692395)
               

               
               208-308, gnl|danRer3|chr12 (10310953-10310843)
               

               
               208-308, gnl|dasNov1|scaffold_1372 (142718-142604)
               

               
               208-308, gnl|echTel1|scaffold_321424 (162590-162479)
               

               
               208-308, gnl|galGal2|chr6 (18338942-18339066)
               

               
               208-308, gnl|hg17|chr10 (90572646-90572760)
               

               
               208-308, gnl|Hg17|chr10 (90572757-90572655)
               

               
               208-308, gnl|loxAfr1|scaffold_13286 (49627-49513)
               

               
               208-308, gnl|mm7|chr19 (33824664-33824777)
               

               
               208-308, gnl|Mm7|chr19 (33824774-33824667)
               

               
               208-308, gnl|monDom2|scaffold_62 (10172876-10172990)
               

               
               208-308, gnl|oryCun1|scaffold_173384 (801-906)
               

               
               208-308, gnl|panTro1|chr8 (92262140-92262254)
               

               
               208-308, gnl|rheMac2|chr9 (88399195-88399309)
               

               
               208-308, gnl|rn3|chr1 (238150207-238150320)
               

               
               208-308, gnl|xenTro1|scaffold_94 (1883741-1883821)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               208-308, gnl|bosTau2|chr26 (35709820-35709720)
               

               
               208-308, gnl|canFam2|chr26 (41692304-41692395)
               

               
               208-308, gnl|danRer3|chr12 (10310953-10310843)
               

               
               208-308, gnl|dasNov1|scaffold_1372 (142718-142604)
               

               
               208-308, gnl|echTel1|scaffold_321424 (162590-162479)
               

               
               208-308, gnl|galGal2|chr6 (18338942-18339066)
               

               
               208-308, gnl|hg17|chr10 (90572646-90572760)
               

               
               208-308, gnl|Hg17|chr10 (90572757-90572655)
               

               
               208-308, gnl|loxAfr1|scaffold_13286 (49627-49513)
               

               
               208-308, gnl|mm7|chr19 (33824664-33824777)
               

               
               208-308, gnl|Mm7|chr19 (33824774-33824667)
               

               
               208-308, gnl|monDom2|scaffold_62 (10172876-10172990)
               

               
               208-308, gnl|oryCun1|scaffold_173384 (801-906)
               

               
               208-308, gnl|panTro1|chr8 (92262140-92262254)
               

               
               208-308, gnl|rheMac2|chr9 (88399195-88399309)
               

               
               208-308, gnl|rn3|chr1 (238150207-238150320)
               

               
               208-308, gnl|xenTro1|scaffold_94 (1883741-1883821)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	208-308, gnl\|bosTau2\|chr26 (35709820-35709720)
	208-308, gnl\|canFam2\|chr26 (41692304-41692395)
	208-308, gnl\|danRer3\|chr12 (10310953-10310843)
	208-308, gnl\|dasNov1\|scaffold_1372 (142718-142604)
	208-308, gnl\|echTel1\|scaffold_321424 (162590-162479)
	208-308, gnl\|galGal2\|chr6 (18338942-18339066)
	208-308, gnl\|hg17\|chr10 (90572646-90572760)
	208-308, gnl\|Hg17\|chr10 (90572757-90572655)
	208-308, gnl\|loxAfr1\|scaffold_13286 (49627-49513)
	208-308, gnl\|mm7\|chr19 (33824664-33824777)
	208-308, gnl\|Mm7\|chr19 (33824774-33824667)
	208-308, gnl\|monDom2\|scaffold_62 (10172876-10172990)
	208-308, gnl\|oryCun1\|scaffold_173384 (801-906)
	208-308, gnl\|panTro1\|chr8 (92262140-92262254)
	208-308, gnl\|rheMac2\|chr9 (88399195-88399309)
	208-308, gnl\|rn3\|chr1 (238150207-238150320)
	208-308, gnl\|xenTro1\|scaffold_94 (1883741-1883821)