Non-Coding RNA Search

rcbl0_018749.y1

Sequence:


               
               AGGAAAAGTTGAAGCATCTGTTCCCAGGATTTATTTTACTGTGCATTTCTTACTGGAAAA
GAACAGACCACCCTCGTGAATTCTTTAAATATGAAATGTTGTTGCGAGGCTATGGCTGAC
AGTAACCACCGTTACAATTCTAAAATACAAGATGCATTAAAATCAGTGGTTGAGGAAAGC
CAAAGCCTGTTTGTACTGTTCAGGTAGATTTTTCTCTCCGCAGTTTGATGTTCCAGTAAA
AAAATCAACCACTTGCTTAGGTATCATATTCACCACCCTCCCACTGTTAACATTAGGAAA
ATCAGGGCTATCACATTGCAGCATTATCTGATTAAACAGTATGGAAAACAACAGCCATGG
CAACAGCAAAGAAAACTGAGACCGTCACAAATCAGACAAATGAAAAAAGTGAAACTTCAA
CCAGATTTGTATTTGTTTTTATTGTCGGATGGTGGTGTTCACAGCCTGTTTCTGGTCTGG
GACCCTGTTGGTGTCTGAGCAGGCGTGCTGTGCCTCTTGACCTCAGTCTGTTTATATTAA
TCTTTATACTCTTTTTCCATAACCCCTCATCTGCCAGAAAACTTGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAAAGTTGAAGCATCTGTTCCCAGGATTTATTTTACTGTGCATTTCTTACTGGAAAA
GAACAGACCACCCTCGTGAATTCTTTAAATATGAAATGTTGTTGCGAGGCTATGGCTGAC
AGTAACCACCGTTACAATTCTAAAATACAAGATGCATTAAAATCAGTGGTTGAGGAAAGC
CAAAGCCTGTTTGTACTGTTCAGGTAGATTTTTCTCTCCGCAGTTTGATGTTCCAGTAAA
AAAATCAACCACTTGCTTAGGTATCATATTCACCACCCTCCCACTGTTAACATTAGGAAA
ATCAGGGCTATCACATTGCAGCATTATCTGATTAAACAGTATGGAAAACAACAGCCATGG
CAACAGCAAAGAAAACTGAGACCGTCACAAATCAGACAAATGAAAAAAGTGAAACTTCAA
CCAGATTTGTATTTGTTTTTATTGTCGGATGGTGGTGTTCACAGCCTGTTTCTGGTCTGG
GACCCTGTTGGTGTCTGAGCAGGCGTGCTGTGCCTCTTGACCTCAGTCTGTTTATATTAA
TCTTTATACTCTTTTTCCATAACCCCTCATCTGCCAGAAAACTTGAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               145-246, + strand, RNAz p=0.837813

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-246, + strand, RNAz p=0.837813

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               4-586, gnl|bosTau2|chr10 (64594705-64594120)
               

               
               4-586, gnl|canFam2|chr8 (56806802-56807737)
               

               
               4-586, gnl|dasNov1|scaffold_13547 (43305-42341)
               

               
               4-586, gnl|echTel1|scaffold_178771 (6283-5385)
               

               
               4-586, gnl|hg17|chr14 (81011275-81012226)
               

               
               4-586, gnl|Hg17|chr14 (81012172-81011591)
               

               
               4-586, gnl|loxAfr1|scaffold_31976 (977-24)
               

               
               4-586, gnl|mm7|chr12 (89291304-89292183)
               

               
               4-586, gnl|Mm7|chr12 (89292139-89291601)
               

               
               4-586, gnl|monDom2|scaffold_8 (50600509-50599645)
               

               
               4-586, gnl|oryCun1|scaffold_213198 (242580-241671)
               

               
               4-586, gnl|panTro1|chr15 (81118179-81119131)
               

               
               4-586, gnl|rheMac2|chr7 (144663334-144664288)
               

               
               4-586, gnl|rn3|chr6 (115434508-115435322)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-586, gnl|bosTau2|chr10 (64594705-64594120)
               

               
               4-586, gnl|canFam2|chr8 (56806802-56807737)
               

               
               4-586, gnl|dasNov1|scaffold_13547 (43305-42341)
               

               
               4-586, gnl|echTel1|scaffold_178771 (6283-5385)
               

               
               4-586, gnl|hg17|chr14 (81011275-81012226)
               

               
               4-586, gnl|Hg17|chr14 (81012172-81011591)
               

               
               4-586, gnl|loxAfr1|scaffold_31976 (977-24)
               

               
               4-586, gnl|mm7|chr12 (89291304-89292183)
               

               
               4-586, gnl|Mm7|chr12 (89292139-89291601)
               

               
               4-586, gnl|monDom2|scaffold_8 (50600509-50599645)
               

               
               4-586, gnl|oryCun1|scaffold_213198 (242580-241671)
               

               
               4-586, gnl|panTro1|chr15 (81118179-81119131)
               

               
               4-586, gnl|rheMac2|chr7 (144663334-144664288)
               

               
               4-586, gnl|rn3|chr6 (115434508-115435322)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	4-586, gnl\|bosTau2\|chr10 (64594705-64594120)
	4-586, gnl\|canFam2\|chr8 (56806802-56807737)
	4-586, gnl\|dasNov1\|scaffold_13547 (43305-42341)
	4-586, gnl\|echTel1\|scaffold_178771 (6283-5385)
	4-586, gnl\|hg17\|chr14 (81011275-81012226)
	4-586, gnl\|Hg17\|chr14 (81012172-81011591)
	4-586, gnl\|loxAfr1\|scaffold_31976 (977-24)
	4-586, gnl\|mm7\|chr12 (89291304-89292183)
	4-586, gnl\|Mm7\|chr12 (89292139-89291601)
	4-586, gnl\|monDom2\|scaffold_8 (50600509-50599645)
	4-586, gnl\|oryCun1\|scaffold_213198 (242580-241671)
	4-586, gnl\|panTro1\|chr15 (81118179-81119131)
	4-586, gnl\|rheMac2\|chr7 (144663334-144664288)
	4-586, gnl\|rn3\|chr6 (115434508-115435322)