Non-Coding RNA Search

rcbl0_019984.y1

Sequence:


               
               GTAGAAAAGAAGAAAATTGAACAGATGGTTCTGGACTACGTTTCAAAACTGCTGGATCTC
ATTTGCCAAATACTGGAAGCCAGTTGGAGGAAACATAATCTTCATCCCTGGGTTCTCCAC
TTTGATAGGCGGGCAAGTGCTGCTGAATATTCGGTCTTTCACATCATGACCAGGATTTTA
GAAGCTACTAATAGTTTGTTTTTACCTCTGCCTCCCGGTTTTCACACTCTGCACACGATC
CTTGGCGTCCGCTGTCTCCCTTTGCATAACCTGCTGCATTACATTGATAATGGAGTGCTG
CTTCTCACAGAAACAGCTGTCACAAGGCTCATGAAAGATCTGGACAATACAGAGAAAAAT
GAAAAACTGAAATTCAGCATCATTGTGCGGCTTCCTCCGCTTATCGGTCAGAAGATCTGC
CGCCTTTGGGATCATCCTGTGAGTTCTAACATTATTTCCCGGAACCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGAAAAGAAGAAAATTGAACAGATGGTTCTGGACTACGTTTCAAAACTGCTGGATCTC
ATTTGCCAAATACTGGAAGCCAGTTGGAGGAAACATAATCTTCATCCCTGGGTTCTCCAC
TTTGATAGGCGGGCAAGTGCTGCTGAATATTCGGTCTTTCACATCATGACCAGGATTTTA
GAAGCTACTAATAGTTTGTTTTTACCTCTGCCTCCCGGTTTTCACACTCTGCACACGATC
CTTGGCGTCCGCTGTCTCCCTTTGCATAACCTGCTGCATTACATTGATAATGGAGTGCTG
CTTCTCACAGAAACAGCTGTCACAAGGCTCATGAAAGATCTGGACAATACAGAGAAAAAT
GAAAAACTGAAATTCAGCATCATTGTGCGGCTTCCTCCGCTTATCGGTCAGAAGATCTGC
CGCCTTTGGGATCATCCTGTGAGTTCTAACATTATTTCCCGGAACCATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55628814|ref|XP_527797.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55628814|ref|XP_527797.1|

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               206-337, gnl|bosTau2|chr4 (19992229-19992360)
               

               
               206-337, gnl|canFam2|chr18 (20399941-20400071)
               

               
               206-337, gnl|danRer3|chr4 (30742393-30742262)
               

               
               206-337, gnl|dasNov1|scaffold_10069 (3447-3316)
               

               
               206-337, gnl|echTel1|scaffold_226526 (5586-5489)
               

               
               206-337, gnl|fr1|chrUn (187038477-187038603)
               

               
               206-337, gnl|galGal2|chr1 (10982838-10982968)
               

               
               206-337, gnl|hg17|chr7 (76588332-76588463)
               

               
               206-337, gnl|Hg17|chr7 (76588469-76588338)
               

               
               206-337, gnl|mm7|chr5 (20325972-20325842)
               

               
               206-337, gnl|Mm7|chr5 (20325834-20325964)
               

               
               206-337, gnl|monDom2|scaffold_30 (28424266-28424135)
               

               
               206-337, gnl|panTro1|chr6 (77746638-77746769)
               

               
               206-337, gnl|rheMac2|chr3 (140041181-140041050)
               

               
               206-337, gnl|rn3|chr4 (9310228-9310359)
               

               
               206-337, gnl|tetNig1|chr19 (3875227-3875105)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               206-337, gnl|bosTau2|chr4 (19992229-19992360)
               

               
               206-337, gnl|canFam2|chr18 (20399941-20400071)
               

               
               206-337, gnl|danRer3|chr4 (30742393-30742262)
               

               
               206-337, gnl|dasNov1|scaffold_10069 (3447-3316)
               

               
               206-337, gnl|echTel1|scaffold_226526 (5586-5489)
               

               
               206-337, gnl|fr1|chrUn (187038477-187038603)
               

               
               206-337, gnl|galGal2|chr1 (10982838-10982968)
               

               
               206-337, gnl|hg17|chr7 (76588332-76588463)
               

               
               206-337, gnl|Hg17|chr7 (76588469-76588338)
               

               
               206-337, gnl|mm7|chr5 (20325972-20325842)
               

               
               206-337, gnl|Mm7|chr5 (20325834-20325964)
               

               
               206-337, gnl|monDom2|scaffold_30 (28424266-28424135)
               

               
               206-337, gnl|panTro1|chr6 (77746638-77746769)
               

               
               206-337, gnl|rheMac2|chr3 (140041181-140041050)
               

               
               206-337, gnl|rn3|chr4 (9310228-9310359)
               

               
               206-337, gnl|tetNig1|chr19 (3875227-3875105)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	206-337, gnl\|bosTau2\|chr4 (19992229-19992360)
	206-337, gnl\|canFam2\|chr18 (20399941-20400071)
	206-337, gnl\|danRer3\|chr4 (30742393-30742262)
	206-337, gnl\|dasNov1\|scaffold_10069 (3447-3316)
	206-337, gnl\|echTel1\|scaffold_226526 (5586-5489)
	206-337, gnl\|fr1\|chrUn (187038477-187038603)
	206-337, gnl\|galGal2\|chr1 (10982838-10982968)
	206-337, gnl\|hg17\|chr7 (76588332-76588463)
	206-337, gnl\|Hg17\|chr7 (76588469-76588338)
	206-337, gnl\|mm7\|chr5 (20325972-20325842)
	206-337, gnl\|Mm7\|chr5 (20325834-20325964)
	206-337, gnl\|monDom2\|scaffold_30 (28424266-28424135)
	206-337, gnl\|panTro1\|chr6 (77746638-77746769)
	206-337, gnl\|rheMac2\|chr3 (140041181-140041050)
	206-337, gnl\|rn3\|chr4 (9310228-9310359)
	206-337, gnl\|tetNig1\|chr19 (3875227-3875105)