Non-Coding RNA Search

rcbl0_020571.y1

Sequence:


               
               TTCCCCCGCCCCCCGCAAAAAAATAAAAATAAAATAAGTATAATGGGTTTTCTATATCTC
AAGTTTAAATATTTTCTTTTTTTTAATATAAAGGCAAGTGAAAGTTTAATAAACTTCTGT
AACTACCAAAAAAAAAAAGCCAAAGCCATTAATGTGCACTACCCAGATCAACTTGGAGCC
AAAATTAGAGCCAAAATGGGTTTAATTCTGAGTGGTTGTCCATATATGAATTTGTAGGAT
TAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCCCGCCCCCCGCAAAAAAATAAAAATAAAATAAGTATAATGGGTTTTCTATATCTC
AAGTTTAAATATTTTCTTTTTTTTAATATAAAGGCAAGTGAAAGTTTAATAAACTTCTGT
AACTACCAAAAAAAAAAAGCCAAAGCCATTAATGTGCACTACCCAGATCAACTTGGAGCC
AAAATTAGAGCCAAAATGGGTTTAATTCTGAGTGGTTGTCCATATATGAATTTGTAGGAT
TAGT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               28-241, gnl|bosTau2|chr7 (18676043-18675839)
               

               
               28-241, gnl|canFam2|chr11 (22782797-22783141)
               

               
               28-241, gnl|dasNov1|scaffold_15943 (43417-43758)
               

               
               28-241, gnl|echTel1|scaffold_183626 (2469-2792)
               

               
               28-241, gnl|hg17|chr5 (130789309-130789648)
               

               
               28-241, gnl|Hg17|chr5 (130789594-130789388)
               

               
               28-241, gnl|loxAfr1|scaffold_1256 (58969-59292)
               

               
               28-241, gnl|mm7|chr11 (54654446-54654162)
               

               
               28-241, gnl|monDom2|scaffold_6 (95287179-95286900)
               

               
               28-241, gnl|oryCun1|scaffold_174942 (5807-5454)
               

               
               28-241, gnl|panTro1|chr4 (137126820-137127164)
               

               
               28-241, gnl|rheMac2|chr6 (127842812-127843146)
               

               
               28-241, gnl|rn3|chr10 (40115760-40115476)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-241, gnl|bosTau2|chr7 (18676043-18675839)
               

               
               28-241, gnl|canFam2|chr11 (22782797-22783141)
               

               
               28-241, gnl|dasNov1|scaffold_15943 (43417-43758)
               

               
               28-241, gnl|echTel1|scaffold_183626 (2469-2792)
               

               
               28-241, gnl|hg17|chr5 (130789309-130789648)
               

               
               28-241, gnl|Hg17|chr5 (130789594-130789388)
               

               
               28-241, gnl|loxAfr1|scaffold_1256 (58969-59292)
               

               
               28-241, gnl|mm7|chr11 (54654446-54654162)
               

               
               28-241, gnl|monDom2|scaffold_6 (95287179-95286900)
               

               
               28-241, gnl|oryCun1|scaffold_174942 (5807-5454)
               

               
               28-241, gnl|panTro1|chr4 (137126820-137127164)
               

               
               28-241, gnl|rheMac2|chr6 (127842812-127843146)
               

               
               28-241, gnl|rn3|chr10 (40115760-40115476)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	28-241, gnl\|bosTau2\|chr7 (18676043-18675839)
	28-241, gnl\|canFam2\|chr11 (22782797-22783141)
	28-241, gnl\|dasNov1\|scaffold_15943 (43417-43758)
	28-241, gnl\|echTel1\|scaffold_183626 (2469-2792)
	28-241, gnl\|hg17\|chr5 (130789309-130789648)
	28-241, gnl\|Hg17\|chr5 (130789594-130789388)
	28-241, gnl\|loxAfr1\|scaffold_1256 (58969-59292)
	28-241, gnl\|mm7\|chr11 (54654446-54654162)
	28-241, gnl\|monDom2\|scaffold_6 (95287179-95286900)
	28-241, gnl\|oryCun1\|scaffold_174942 (5807-5454)
	28-241, gnl\|panTro1\|chr4 (137126820-137127164)
	28-241, gnl\|rheMac2\|chr6 (127842812-127843146)
	28-241, gnl\|rn3\|chr10 (40115760-40115476)