Non-Coding RNA Search

rcbl0_020772.y1

Sequence:


               
               GAAACCTAATTCAAGATATTGAGCCCATTAATATGATTCAGACGTGATGGTTAACTTTTA
TAGCTAAAAAAAATCATTTACCCAAAAGAGGCAAATCTATATCATTTTATGAAAATGTTA
CTTTTTAAGAGCATTTCTTTTCCCCCTGAAGAAGTTTCCTGTGAGCTAACTCTTCATTAT
CTATGACAGGGCTTGGAGGTGGGATTCAGTGGCTTGTTTGACTCATTGTCTCATTGAATG
CAGGTTTTGTCTTGATTGCGTATGTTAGCATGCTTGCTTTGTTCCCCAAGGCAAATATTC
AAGGACATGAAGTAATAAAACTTAATACAGGAGCAATTAAAATATGGAATATAATTTATG
AAATAATAGAAACCAAGTTGACTGTTTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACCTAATTCAAGATATTGAGCCCATTAATATGATTCAGACGTGATGGTTAACTTTTA
TAGCTAAAAAAAATCATTTACCCAAAAGAGGCAAATCTATATCATTTTATGAAAATGTTA
CTTTTTAAGAGCATTTCTTTTCCCCCTGAAGAAGTTTCCTGTGAGCTAACTCTTCATTAT
CTATGACAGGGCTTGGAGGTGGGATTCAGTGGCTTGTTTGACTCATTGTCTCATTGAATG
CAGGTTTTGTCTTGATTGCGTATGTTAGCATGCTTGCTTTGTTCCCCAAGGCAAATATTC
AAGGACATGAAGTAATAAAACTTAATACAGGAGCAATTAAAATATGGAATATAATTTATG
AAATAATAGAAACCAAGTTGACTGTTTATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               225-390, + strand, RNAz p=0.958695

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               225-390, + strand, RNAz p=0.958695

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               66-390, gnl|bosTau2|chr18 (5420389-5420714)
               

               
               66-390, gnl|canFam2|chr5 (77266499-77265765)
               

               
               66-390, gnl|dasNov1|scaffold_23084 (42057-41330)
               

               
               66-390, gnl|hg17|chr16 (75477986-75478713)
               

               
               66-390, gnl|Hg17|chr16 (75478706-75478399)
               

               
               66-390, gnl|loxAfr1|scaffold_44355 (4139-3404)
               

               
               66-390, gnl|mm7|chr8 (111816920-111817621)
               

               
               66-390, gnl|Mm7|chr8 (111817614-111817323)
               

               
               66-390, gnl|oryCun1|scaffold_204442 (3289-3978)
               

               
               66-390, gnl|panTro1|chr18 (69945845-69946578)
               

               
               66-390, gnl|rheMac2|chr20 (74963409-74964144)
               

               
               66-390, gnl|rn3|chr19 (43220950-43221651)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-390, gnl|bosTau2|chr18 (5420389-5420714)
               

               
               66-390, gnl|canFam2|chr5 (77266499-77265765)
               

               
               66-390, gnl|dasNov1|scaffold_23084 (42057-41330)
               

               
               66-390, gnl|hg17|chr16 (75477986-75478713)
               

               
               66-390, gnl|Hg17|chr16 (75478706-75478399)
               

               
               66-390, gnl|loxAfr1|scaffold_44355 (4139-3404)
               

               
               66-390, gnl|mm7|chr8 (111816920-111817621)
               

               
               66-390, gnl|Mm7|chr8 (111817614-111817323)
               

               
               66-390, gnl|oryCun1|scaffold_204442 (3289-3978)
               

               
               66-390, gnl|panTro1|chr18 (69945845-69946578)
               

               
               66-390, gnl|rheMac2|chr20 (74963409-74964144)
               

               
               66-390, gnl|rn3|chr19 (43220950-43221651)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	66-390, gnl\|bosTau2\|chr18 (5420389-5420714)
	66-390, gnl\|canFam2\|chr5 (77266499-77265765)
	66-390, gnl\|dasNov1\|scaffold_23084 (42057-41330)
	66-390, gnl\|hg17\|chr16 (75477986-75478713)
	66-390, gnl\|Hg17\|chr16 (75478706-75478399)
	66-390, gnl\|loxAfr1\|scaffold_44355 (4139-3404)
	66-390, gnl\|mm7\|chr8 (111816920-111817621)
	66-390, gnl\|Mm7\|chr8 (111817614-111817323)
	66-390, gnl\|oryCun1\|scaffold_204442 (3289-3978)
	66-390, gnl\|panTro1\|chr18 (69945845-69946578)
	66-390, gnl\|rheMac2\|chr20 (74963409-74964144)
	66-390, gnl\|rn3\|chr19 (43220950-43221651)