Non-Coding RNA Search

rcbl0_020970.y1

Sequence:


               
               CTAAGGAGGCCAACAATGGACCTCCATTTAACTTTCCTGGTAATTTTGGTGGGTCAAATG
CATTTGGGCCACCACTCCCTCCTCCAGGATTAGGAGGGGCCTTTGGTGATGCTAGGCCTG
GAATGCCTTCAGTTGGAAATAGTGGTTTGCCTGGTCTCGGACTGGATGTTCCAGGTTTTG
GAGGTGGACCAAATAATTTAAGTGGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAGGAGGCCAACAATGGACCTCCATTTAACTTTCCTGGTAATTTTGGTGGGTCAAATG
CATTTGGGCCACCACTCCCTCCTCCAGGATTAGGAGGGGCCTTTGGTGATGCTAGGCCTG
GAATGCCTTCAGTTGGAAATAGTGGTTTGCCTGGTCTCGGACTGGATGTTCCAGGTTTTG
GAGGTGGACCAAATAATTTAAGTGGACC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-208, - strand, RNAz p=0.98574
               

               
               4-159, - strand, RNAz p=0.724816

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-208, - strand, RNAz p=0.98574
               

               
               4-159, - strand, RNAz p=0.724816

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               130-208, + strand, RNAmicro p=0.996384

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               130-208, + strand, RNAmicro p=0.996384

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               3-205, CJ435965 macaque brain cDNA library QccE Macaca fascicularis cDNA 
(dbj|CJ435965.1|), blast E-value=0, identity=93.69% 
               

               
               3-205, DKFZp468K012_r1 468 (synonym (emb|CR547321.1|), blast E-value=0, 
identity=93.69% 
               

               
               11-208, Hw_liver_34_050725_E06 Bos taurus CF-24-HW liver cDNA library Bos 
(gb|DV783902.1|), blast E-value=0, identity=97.47% 
               

               
               1-208, Hw_loin_EST_b27HW_A07 Bos taurus CF-24-HW loin cDNA library Bos 
(gb|DV792439.1|), blast E-value=0, identity=95.67% 
               

               
               1-208, LB0266.CR_I20 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV884956.1|), 
blast E-value=0, identity=97.6% 
               

               
               1-208, 000708BMNA004867HT BMNA Bos taurus cDNA, mRNA sequence (gb|DY208593.1|), 
blast E-value=0, identity=97.6%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               3-205, CJ435965 macaque brain cDNA library QccE Macaca fascicularis cDNA 
(dbj|CJ435965.1|), blast E-value=0, identity=93.69% 
               

               
               3-205, DKFZp468K012_r1 468 (synonym (emb|CR547321.1|), blast E-value=0, 
identity=93.69% 
               

               
               11-208, Hw_liver_34_050725_E06 Bos taurus CF-24-HW liver cDNA library Bos 
(gb|DV783902.1|), blast E-value=0, identity=97.47% 
               

               
               1-208, Hw_loin_EST_b27HW_A07 Bos taurus CF-24-HW loin cDNA library Bos 
(gb|DV792439.1|), blast E-value=0, identity=95.67% 
               

               
               1-208, LB0266.CR_I20 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV884956.1|), 
blast E-value=0, identity=97.6% 
               

               
               1-208, 000708BMNA004867HT BMNA Bos taurus cDNA, mRNA sequence (gb|DY208593.1|), 
blast E-value=0, identity=97.6%

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-208, gnl|bosTau2|chr13 (45096284-45096077)
               

               
               1-208, gnl|canFam2|chr24 (27549470-27549850)
               

               
               1-208, gnl|danRer3|chr11 (26391288-26390966)
               

               
               1-208, gnl|dasNov1|scaffold_3674 (300-668)
               

               
               1-208, gnl|echTel1|scaffold_314238 (37673-38053)
               

               
               1-208, gnl|fr1|chrUn (254484871-254485182)
               

               
               1-208, gnl|galGal2|chr20 (967494-967127)
               

               
               1-208, gnl|hg17|chr20 (33704179-33704565)
               

               
               1-208, gnl|Hg17|chr20 (33704524-33704314)
               

               
               1-208, gnl|loxAfr1|scaffold_2459 (37189-37574)
               

               
               1-208, gnl|mm7|chr2 (155836537-155836920)
               

               
               1-208, gnl|Mm7|chr2 (155836879-155836669)
               

               
               1-208, gnl|monDom2|scaffold_6 (11344034-11343661)
               

               
               1-208, gnl|oryCun1|scaffold_194049 (9918-10301)
               

               
               1-208, gnl|panTro1|chr21 (35724428-35724814)
               

               
               1-208, gnl|rheMac2|chr10 (28879493-28879107)
               

               
               1-208, gnl|rn3|chr3 (146410495-146410878)
               

               
               1-208, gnl|tetNig1|chrUn_random (12071709-12072112)
               

               
               1-208, gnl|xenTro1|scaffold_35 (2917085-2917455)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-208, gnl|bosTau2|chr13 (45096284-45096077)
               

               
               1-208, gnl|canFam2|chr24 (27549470-27549850)
               

               
               1-208, gnl|danRer3|chr11 (26391288-26390966)
               

               
               1-208, gnl|dasNov1|scaffold_3674 (300-668)
               

               
               1-208, gnl|echTel1|scaffold_314238 (37673-38053)
               

               
               1-208, gnl|fr1|chrUn (254484871-254485182)
               

               
               1-208, gnl|galGal2|chr20 (967494-967127)
               

               
               1-208, gnl|hg17|chr20 (33704179-33704565)
               

               
               1-208, gnl|Hg17|chr20 (33704524-33704314)
               

               
               1-208, gnl|loxAfr1|scaffold_2459 (37189-37574)
               

               
               1-208, gnl|mm7|chr2 (155836537-155836920)
               

               
               1-208, gnl|Mm7|chr2 (155836879-155836669)
               

               
               1-208, gnl|monDom2|scaffold_6 (11344034-11343661)
               

               
               1-208, gnl|oryCun1|scaffold_194049 (9918-10301)
               

               
               1-208, gnl|panTro1|chr21 (35724428-35724814)
               

               
               1-208, gnl|rheMac2|chr10 (28879493-28879107)
               

               
               1-208, gnl|rn3|chr3 (146410495-146410878)
               

               
               1-208, gnl|tetNig1|chrUn_random (12071709-12072112)
               

               
               1-208, gnl|xenTro1|scaffold_35 (2917085-2917455)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	1-208, - strand, RNAz p=0.98574
	4-159, - strand, RNAz p=0.724816

	3-205, CJ435965 macaque brain cDNA library QccE Macaca fascicularis cDNA (dbj\|CJ435965.1\|), blast E-value=0, identity=93.69%
	3-205, DKFZp468K012_r1 468 (synonym (emb\|CR547321.1\|), blast E-value=0, identity=93.69%
	11-208, Hw_liver_34_050725_E06 Bos taurus CF-24-HW liver cDNA library Bos (gb\|DV783902.1\|), blast E-value=0, identity=97.47%
	1-208, Hw_loin_EST_b27HW_A07 Bos taurus CF-24-HW loin cDNA library Bos (gb\|DV792439.1\|), blast E-value=0, identity=95.67%
	1-208, LB0266.CR_I20 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb\|DV884956.1\|), blast E-value=0, identity=97.6%
	1-208, 000708BMNA004867HT BMNA Bos taurus cDNA, mRNA sequence (gb\|DY208593.1\|), blast E-value=0, identity=97.6%

	1-208, gnl\|bosTau2\|chr13 (45096284-45096077)
	1-208, gnl\|canFam2\|chr24 (27549470-27549850)
	1-208, gnl\|danRer3\|chr11 (26391288-26390966)
	1-208, gnl\|dasNov1\|scaffold_3674 (300-668)
	1-208, gnl\|echTel1\|scaffold_314238 (37673-38053)
	1-208, gnl\|fr1\|chrUn (254484871-254485182)
	1-208, gnl\|galGal2\|chr20 (967494-967127)
	1-208, gnl\|hg17\|chr20 (33704179-33704565)
	1-208, gnl\|Hg17\|chr20 (33704524-33704314)
	1-208, gnl\|loxAfr1\|scaffold_2459 (37189-37574)
	1-208, gnl\|mm7\|chr2 (155836537-155836920)
	1-208, gnl\|Mm7\|chr2 (155836879-155836669)
	1-208, gnl\|monDom2\|scaffold_6 (11344034-11343661)
	1-208, gnl\|oryCun1\|scaffold_194049 (9918-10301)
	1-208, gnl\|panTro1\|chr21 (35724428-35724814)
	1-208, gnl\|rheMac2\|chr10 (28879493-28879107)
	1-208, gnl\|rn3\|chr3 (146410495-146410878)
	1-208, gnl\|tetNig1\|chrUn_random (12071709-12072112)
	1-208, gnl\|xenTro1\|scaffold_35 (2917085-2917455)