Non-Coding RNA Search

rcbl0_021242.y1

Sequence:


               
               TAAGAAGCAACTTCTTAAGACTAAATCTTTTTTCCGACAAGAAGTGGAAAATAACACATT
GGGAAGTCCCGCTGCTTCTGAGCTTATAGAGCACTTGAAACCTACTTACTGGTTTTCTGC
GCACCTTCACGTGAAGTTTGCAGCCTTGATGCAGCATCAGGTCAAGGATAAAGAACAGTC
AGCCAAAGCAACCAAATTTCTAGCCTTGGACAAATGCTTGCCCCACAGAGACTTTCTTCA
GTGTAATAGAAATAGAACATGACCCCAGTGCTCCTGAATACTTGGAATATGATACTGAAT
G

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGAAGCAACTTCTTAAGACTAAATCTTTTTTCCGACAAGAAGTGGAAAATAACACATT
GGGAAGTCCCGCTGCTTCTGAGCTTATAGAGCACTTGAAACCTACTTACTGGTTTTCTGC
GCACCTTCACGTGAAGTTTGCAGCCTTGATGCAGCATCAGGTCAAGGATAAAGAACAGTC
AGCCAAAGCAACCAAATTTCTAGCCTTGGACAAATGCTTGCCCCACAGAGACTTTCTTCA
GTGTAATAGAAATAGAACATGACCCCAGTGCTCCTGAATACTTGGAATATGATACTGAAT
G

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               2-120, + strand, RNAz p=0.553776

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, + strand, RNAz p=0.553776

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               2-162, gnl|bosTau2|chr1 (82325235-82325395)
               

               
               2-162, gnl|canFam2|chr23 (37436332-37436437)
               

               
               2-162, gnl|danRer3|chr18 (20238671-20238772)
               

               
               2-162, gnl|fr1|chrUn (223763764-223763659)
               

               
               2-162, gnl|galGal2|chr9 (91006-91111)
               

               
               2-162, gnl|hg17|chr3 (139368618-139368723)
               

               
               2-162, gnl|Hg17|chr3 (139368779-139368619)
               

               
               2-162, gnl|loxAfr1|scaffold_71306 (8581-8466)
               

               
               2-162, gnl|mm7|chr9 (99223362-99223257)
               

               
               2-162, gnl|Mm7|chr9 (99223199-99223359)
               

               
               2-162, gnl|monDom2|scaffold_24 (33289284-33289389)
               

               
               2-162, gnl|oryCun1|scaffold_173321 (58264-58159)
               

               
               2-162, gnl|panTro1|chr2 (141629797-141629902)
               

               
               2-162, gnl|rheMac2|chr2 (149657292-149657187)
               

               
               2-162, gnl|rn3|chr8 (104469395-104469290)
               

               
               2-162, gnl|tetNig1|chr2 (7033510-7033615)
               

               
               2-162, gnl|xenTro1|scaffold_203 (1125069-1124964)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-162, gnl|bosTau2|chr1 (82325235-82325395)
               

               
               2-162, gnl|canFam2|chr23 (37436332-37436437)
               

               
               2-162, gnl|danRer3|chr18 (20238671-20238772)
               

               
               2-162, gnl|fr1|chrUn (223763764-223763659)
               

               
               2-162, gnl|galGal2|chr9 (91006-91111)
               

               
               2-162, gnl|hg17|chr3 (139368618-139368723)
               

               
               2-162, gnl|Hg17|chr3 (139368779-139368619)
               

               
               2-162, gnl|loxAfr1|scaffold_71306 (8581-8466)
               

               
               2-162, gnl|mm7|chr9 (99223362-99223257)
               

               
               2-162, gnl|Mm7|chr9 (99223199-99223359)
               

               
               2-162, gnl|monDom2|scaffold_24 (33289284-33289389)
               

               
               2-162, gnl|oryCun1|scaffold_173321 (58264-58159)
               

               
               2-162, gnl|panTro1|chr2 (141629797-141629902)
               

               
               2-162, gnl|rheMac2|chr2 (149657292-149657187)
               

               
               2-162, gnl|rn3|chr8 (104469395-104469290)
               

               
               2-162, gnl|tetNig1|chr2 (7033510-7033615)
               

               
               2-162, gnl|xenTro1|scaffold_203 (1125069-1124964)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	2-162, gnl\|bosTau2\|chr1 (82325235-82325395)
	2-162, gnl\|canFam2\|chr23 (37436332-37436437)
	2-162, gnl\|danRer3\|chr18 (20238671-20238772)
	2-162, gnl\|fr1\|chrUn (223763764-223763659)
	2-162, gnl\|galGal2\|chr9 (91006-91111)
	2-162, gnl\|hg17\|chr3 (139368618-139368723)
	2-162, gnl\|Hg17\|chr3 (139368779-139368619)
	2-162, gnl\|loxAfr1\|scaffold_71306 (8581-8466)
	2-162, gnl\|mm7\|chr9 (99223362-99223257)
	2-162, gnl\|Mm7\|chr9 (99223199-99223359)
	2-162, gnl\|monDom2\|scaffold_24 (33289284-33289389)
	2-162, gnl\|oryCun1\|scaffold_173321 (58264-58159)
	2-162, gnl\|panTro1\|chr2 (141629797-141629902)
	2-162, gnl\|rheMac2\|chr2 (149657292-149657187)
	2-162, gnl\|rn3\|chr8 (104469395-104469290)
	2-162, gnl\|tetNig1\|chr2 (7033510-7033615)
	2-162, gnl\|xenTro1\|scaffold_203 (1125069-1124964)