Non-Coding RNA Search

rcbl0_022642.y1

Sequence:


               
               AAAAAATGAGACAAAGGTATTGGAAAGCTAGTCAGTGCTGCGTTCTTATTCTTACATGTG
GGGGAAGTGAGACACAGAGAGGTAAGAAGTTAACTGCCCAGGTGCACAACTAGGGTTCCC
TGGTGAGAGAGAGCACATCTGGCCCTGTGCACTTTCCACTCTATCTTATGGTCTCCAAGG
ACTCTATGCTCCCTCTGCCTGGGGTCACATTCATGCCTGAAGCCATCAGCATCATTTCCA
AAGCTCTATCAATCCGTCTCAAGATCTCCCCTCCTTTATCGTGGAGACTAGAAACAGGAA
AAGGGAGCCTCATGATGAAATGCAGCTGGCCCTGGGGTTTCTGGATTAGAACCAAATTTT
GTGTTTGTGGAATAGATACCAATTTGCTGGCTGTGTGACATTGGGCAAATTACTCCACCC
TGCTGAGCTGCAATTTCCTCCTGTGTAAAAAGAAAATGACACCCCTTTCAGGGTGAGCAG
CAAACTAAAGTCATTGTGACTCCCAAGCCTGTACTTTTAACTGTGATCCTACCTCAGATT
CAGAGGCTGTCCAGTCCCATGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAATGAGACAAAGGTATTGGAAAGCTAGTCAGTGCTGCGTTCTTATTCTTACATGTG
GGGGAAGTGAGACACAGAGAGGTAAGAAGTTAACTGCCCAGGTGCACAACTAGGGTTCCC
TGGTGAGAGAGAGCACATCTGGCCCTGTGCACTTTCCACTCTATCTTATGGTCTCCAAGG
ACTCTATGCTCCCTCTGCCTGGGGTCACATTCATGCCTGAAGCCATCAGCATCATTTCCA
AAGCTCTATCAATCCGTCTCAAGATCTCCCCTCCTTTATCGTGGAGACTAGAAACAGGAA
AAGGGAGCCTCATGATGAAATGCAGCTGGCCCTGGGGTTTCTGGATTAGAACCAAATTTT
GTGTTTGTGGAATAGATACCAATTTGCTGGCTGTGTGACATTGGGCAAATTACTCCACCC
TGCTGAGCTGCAATTTCCTCCTGTGTAAAAAGAAAATGACACCCCTTTCAGGGTGAGCAG
CAAACTAAAGTCATTGTGACTCCCAAGCCTGTACTTTTAACTGTGATCCTACCTCAGATT
CAGAGGCTGTCCAGTCCCATGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               393-512, - strand, RNAz p=0.869291

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               393-512, - strand, RNAz p=0.869291

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               36-561, gnl|bosTau2|chr7 (44004632-44005156)
               

               
               36-561, gnl|Hg17|chr5 (153437995-153438481)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-561, gnl|bosTau2|chr7 (44004632-44005156)
               

               
               36-561, gnl|Hg17|chr5 (153437995-153438481)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	36-561, gnl\|bosTau2\|chr7 (44004632-44005156)
	36-561, gnl\|Hg17\|chr5 (153437995-153438481)