Non-Coding RNA Search

rcbl0_022843.y1

Sequence:


               
               tccgattcaacccctagcctgggaacctccatgtgcagtgggtgtggtcctaagaagTGG
GGAAAAAAAAACTGTCTAGTTTGAACTTCTTTTATGTAACTGTGAAAATAATAGAAAGTC
ACCTCAAAATGGTGAAGGATATGAGAAGACTGAAGAAATATAGATAAATGCTGACAAGGC
TTTTCAGTAACACAGTAAAGCCCTGTTGTCTGGTCCAGATATACCAGGAATCGAATGGCA
TCTCTTACTAACAAGCCTAACGTGTGTCCTCTGCCCATCATTGCGGTGGGTCTACTGTAC
TTATTTCTTTTCCTTCCAAAGGCATGATAACTGGCATCTCAACAAATGTGCAGTCATTGC
TGCTCCCTCATAGCCACTTCCTGTGTGGGTTACAGCAGCTGTTGAACAGAACAGAGCGCA
GTGGGGGTCAGGCTGTGCAAAAACGAAGCCTGAGCCTTTTAATTGTGAGGTAGTTAGACC
ACAGGAATGCTGAATCTTCAAGTCCATTCAGAAAGATTTCTCCTGTGGAAATTTGCCAGG
AGTTCAGTGCTCTGCTGAGAAATTCAAGTTAAGCCTAAATTTATAGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               tccgattcaacccctagcctgggaacctccatgtgcagtgggtgtggtcctaagaagTGG
GGAAAAAAAAACTGTCTAGTTTGAACTTCTTTTATGTAACTGTGAAAATAATAGAAAGTC
ACCTCAAAATGGTGAAGGATATGAGAAGACTGAAGAAATATAGATAAATGCTGACAAGGC
TTTTCAGTAACACAGTAAAGCCCTGTTGTCTGGTCCAGATATACCAGGAATCGAATGGCA
TCTCTTACTAACAAGCCTAACGTGTGTCCTCTGCCCATCATTGCGGTGGGTCTACTGTAC
TTATTTCTTTTCCTTCCAAAGGCATGATAACTGGCATCTCAACAAATGTGCAGTCATTGC
TGCTCCCTCATAGCCACTTCCTGTGTGGGTTACAGCAGCTGTTGAACAGAACAGAGCGCA
GTGGGGGTCAGGCTGTGCAAAAACGAAGCCTGAGCCTTTTAATTGTGAGGTAGTTAGACC
ACAGGAATGCTGAATCTTCAAGTCCATTCAGAAAGATTTCTCCTGTGGAAATTTGCCAGG
AGTTCAGTGCTCTGCTGAGAAATTCAAGTTAAGCCTAAATTTATAGCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               346-589, - strand, RNAz p=0.671021

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               346-589, - strand, RNAz p=0.671021

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               68-589, gnl|bosTau2|chr19 (41043906-41043369)
               

               
               68-589, gnl|Hg17|chr17 (43612092-43611539)
               

               
               68-589, gnl|Mm7|chr11 (96822548-96823058)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-589, gnl|bosTau2|chr19 (41043906-41043369)
               

               
               68-589, gnl|Hg17|chr17 (43612092-43611539)
               

               
               68-589, gnl|Mm7|chr11 (96822548-96823058)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	68-589, gnl\|bosTau2\|chr19 (41043906-41043369)
	68-589, gnl\|Hg17\|chr17 (43612092-43611539)
	68-589, gnl\|Mm7\|chr11 (96822548-96823058)