Non-Coding RNA Search

rcbl0_023622.y1

Sequence:


               
               CACAGTGCTGTCTTATGTCTATTTACCAAAAGCATTTTGAGGAATTTAGCTCCAGTTTTG
ATTGCCAGTTCACTCCTGGCAGACTCATGAAAGAAGAAGCACAAGGGGCCCCCTTCACTC
CTCTGGTGAAGGAGTTTGATAAATGAGGGATTCGAGCAATGTGAATTCCTTCTAGAGCAA
TGCAAAGGAGACAGCCAGCAGCATCTCCTGGGTATCAGACAAAGTCCTACATAGCTGCTC
TTCTCAAGTCAGAAACTTGAAGAGCGTTATTTTCTGGATCTATGAGGATTGGAGGCTATA
ACCTAGTAACGTTTTTTTTAAAAAAACAAGTCTGTTCCCTCAAGAGTGGACTCTGGAATG
GGAGGGTGGGGTAGCTTTGTGGCTTTTTTCATTTGTGTCCTGCATGAAGGCAGAGACTTT
CAGTTTTATGTGTTTGGTTGGTGCCCACAGAGTGTGTATAGATTCCTAATAAACACTGAT
GATAATGTTGATGGAAAGGTCTCAGTTTGAGCTTCCAGTTCTGAAGAATGAAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGTGCTGTCTTATGTCTATTTACCAAAAGCATTTTGAGGAATTTAGCTCCAGTTTTG
ATTGCCAGTTCACTCCTGGCAGACTCATGAAAGAAGAAGCACAAGGGGCCCCCTTCACTC
CTCTGGTGAAGGAGTTTGATAAATGAGGGATTCGAGCAATGTGAATTCCTTCTAGAGCAA
TGCAAAGGAGACAGCCAGCAGCATCTCCTGGGTATCAGACAAAGTCCTACATAGCTGCTC
TTCTCAAGTCAGAAACTTGAAGAGCGTTATTTTCTGGATCTATGAGGATTGGAGGCTATA
ACCTAGTAACGTTTTTTTTAAAAAAACAAGTCTGTTCCCTCAAGAGTGGACTCTGGAATG
GGAGGGTGGGGTAGCTTTGTGGCTTTTTTCATTTGTGTCCTGCATGAAGGCAGAGACTTT
CAGTTTTATGTGTTTGGTTGGTGCCCACAGAGTGTGTATAGATTCCTAATAAACACTGAT
GATAATGTTGATGGAAAGGTCTCAGTTTGAGCTTCCAGTTCTGAAGAATGAAGCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-158, - strand, RNAz p=0.863112
               

               
               427-535, - strand, RNAz p=0.932225

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-158, - strand, RNAz p=0.863112
               

               
               427-535, - strand, RNAz p=0.932225

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-535, gnl|bosTau2|chr20 (13965610-13965106)
               

               
               1-535, gnl|Hg17|chr5 (53249517-53248985)
               

               
               1-535, gnl|Mm7|chr13 (111303291-111303777)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-535, gnl|bosTau2|chr20 (13965610-13965106)
               

               
               1-535, gnl|Hg17|chr5 (53249517-53248985)
               

               
               1-535, gnl|Mm7|chr13 (111303291-111303777)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	40-158, - strand, RNAz p=0.863112
	427-535, - strand, RNAz p=0.932225

	1-535, gnl\|bosTau2\|chr20 (13965610-13965106)
	1-535, gnl\|Hg17\|chr5 (53249517-53248985)
	1-535, gnl\|Mm7\|chr13 (111303291-111303777)