Non-Coding RNA Search

rcbl0_024267.y1

Sequence:


               
               CTTTCTCGGGCAGGAGTGAGAGAGGGAATCAAAGGAAGTTTGGAAACTTTATTTCCAGGA
TATTCGGCGAGGTATTTACTTCTGAAAGAGGGAGTCCTGTGTCTGCCGAATTCTGGAGGA
GAGGAGGGAGGAGCAAGCACAGCAAGGGGAAGGACTCAGGGTGCAGAAGGCAGGCACGAA
GCAGCAGTGATGCTTTTACTTTGGTCTGATGCAGGGAAAGGGCTCCAGGGTACATTGTCC
TACATACTGGTCTTTGAGGAACACTTGGCCAGAAAGAGACTGGGAGCAGTCAGGGAAGGG
GGATGACCCAGAGTGTGTTCGGATCTAGCGTGTCCTGAATTCCCCCCACCTCATCCTGCA
AGTGAAAATGGAAAGAGTTTGAGGGCTATAGGCAGGAAGCCTCGGTGGAAGAGTGGGAGA
GATGGAGAGATGACAGCAGAAGAACCCTGTGTTTCCAAGACACACTGGCCATGGAGACTG
CTTTGTCCCTTGACAGTCCACTTGCCTCTTCTTGGCCACTTCCCATCAGAACAGAACTCA
CCCCTGGTCCTTGAAGTCAGCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCTCGGGCAGGAGTGAGAGAGGGAATCAAAGGAAGTTTGGAAACTTTATTTCCAGGA
TATTCGGCGAGGTATTTACTTCTGAAAGAGGGAGTCCTGTGTCTGCCGAATTCTGGAGGA
GAGGAGGGAGGAGCAAGCACAGCAAGGGGAAGGACTCAGGGTGCAGAAGGCAGGCACGAA
GCAGCAGTGATGCTTTTACTTTGGTCTGATGCAGGGAAAGGGCTCCAGGGTACATTGTCC
TACATACTGGTCTTTGAGGAACACTTGGCCAGAAAGAGACTGGGAGCAGTCAGGGAAGGG
GGATGACCCAGAGTGTGTTCGGATCTAGCGTGTCCTGAATTCCCCCCACCTCATCCTGCA
AGTGAAAATGGAAAGAGTTTGAGGGCTATAGGCAGGAAGCCTCGGTGGAAGAGTGGGAGA
GATGGAGAGATGACAGCAGAAGAACCCTGTGTTTCCAAGACACACTGGCCATGGAGACTG
CTTTGTCCCTTGACAGTCCACTTGCCTCTTCTTGGCCACTTCCCATCAGAACAGAACTCA
CCCCTGGTCCTTGAAGTCAGCTGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-98, - strand, RNAz p=0.520312

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-98, - strand, RNAz p=0.520312

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-565, gnl|bosTau2|chr2 (57806563-57807132)
               

               
               1-565, gnl|canFam2|chr37 (18585715-18586145)
               

               
               1-565, gnl|dasNov1|scaffold_8079 (15317-14893)
               

               
               1-565, gnl|hg17|chr2 (207836253-207836676)
               

               
               1-565, gnl|Hg17|chr2 (207836923-207836307)
               

               
               1-565, gnl|mm7|chr1 (64340829-64341142)
               

               
               1-565, gnl|Mm7|chr1 (64341370-64340863)
               

               
               1-565, gnl|panTro1|chr13 (97883493-97883909)
               

               
               1-565, gnl|rheMac2|chr12 (71041196-71041619)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-565, gnl|bosTau2|chr2 (57806563-57807132)
               

               
               1-565, gnl|canFam2|chr37 (18585715-18586145)
               

               
               1-565, gnl|dasNov1|scaffold_8079 (15317-14893)
               

               
               1-565, gnl|hg17|chr2 (207836253-207836676)
               

               
               1-565, gnl|Hg17|chr2 (207836923-207836307)
               

               
               1-565, gnl|mm7|chr1 (64340829-64341142)
               

               
               1-565, gnl|Mm7|chr1 (64341370-64340863)
               

               
               1-565, gnl|panTro1|chr13 (97883493-97883909)
               

               
               1-565, gnl|rheMac2|chr12 (71041196-71041619)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	1-565, gnl\|bosTau2\|chr2 (57806563-57807132)
	1-565, gnl\|canFam2\|chr37 (18585715-18586145)
	1-565, gnl\|dasNov1\|scaffold_8079 (15317-14893)
	1-565, gnl\|hg17\|chr2 (207836253-207836676)
	1-565, gnl\|Hg17\|chr2 (207836923-207836307)
	1-565, gnl\|mm7\|chr1 (64340829-64341142)
	1-565, gnl\|Mm7\|chr1 (64341370-64340863)
	1-565, gnl\|panTro1\|chr13 (97883493-97883909)
	1-565, gnl\|rheMac2\|chr12 (71041196-71041619)