Non-Coding RNA Search

rcbl_0250.y1

Sequence:


               
               GTTTAGGGCAGTTTGGACGGAGCAGTGCAGCTTTCTCCGTTAAGCCCCCTTGAGAGGGCA
TATATATTGCCTGGAAGGTGAAGTCTGAGAATGAGCAGATGAACAATTATCCCCACACAT
GTAAACTGCAGCTTGTGTGGTGTAAATATACACTCCCTGCCTGGAACTGCCTGTGTAACA
TTCTCTCTTTGGGCTCTGTGGTTTCTCAATACATTCCAACTGTTTGGAGGCTGGAGCTTG
GCTCAGCAAGCACAGATAAACAGCTTCCTGGAGCAAGCTGCCAGTGTGACGAGCAATGAC
CTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTAGGGCAGTTTGGACGGAGCAGTGCAGCTTTCTCCGTTAAGCCCCCTTGAGAGGGCA
TATATATTGCCTGGAAGGTGAAGTCTGAGAATGAGCAGATGAACAATTATCCCCACACAT
GTAAACTGCAGCTTGTGTGGTGTAAATATACACTCCCTGCCTGGAACTGCCTGTGTAACA
TTCTCTCTTTGGGCTCTGTGGTTTCTCAATACATTCCAACTGTTTGGAGGCTGGAGCTTG
GCTCAGCAAGCACAGATAAACAGCTTCCTGGAGCAAGCTGCCAGTGTGACGAGCAATGAC
CTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               71-179, - strand, RNAz p=0.539887

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-179, - strand, RNAz p=0.539887

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               29-304, gnl|bosTau2|chr15 (49262260-49262521)
               

               
               29-304, gnl|canFam2|chr18 (45585102-45584730)
               

               
               29-304, gnl|dasNov1|scaffold_116781 (7377-7752)
               

               
               29-304, gnl|echTel1|scaffold_292437 (44274-44634)
               

               
               29-304, gnl|hg17|chr11 (46982776-46983148)
               

               
               29-304, gnl|Hg17|chr11 (46983230-46982946)
               

               
               29-304, gnl|loxAfr1|scaffold_30772 (14330-14680)
               

               
               29-304, gnl|mm7|chr2 (91262637-91262263)
               

               
               29-304, gnl|Mm7|chr2 (91262187-91262423)
               

               
               29-304, gnl|monDom2|scaffold_33 (12951237-12951563)
               

               
               29-304, gnl|oryCun1|scaffold_182299 (35068-35435)
               

               
               29-304, gnl|panTro1|chr9 (47503471-47503843)
               

               
               29-304, gnl|rheMac2|chr14 (25123331-25122958)
               

               
               29-304, gnl|rn3|chr3 (75664089-75663723)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-304, gnl|bosTau2|chr15 (49262260-49262521)
               

               
               29-304, gnl|canFam2|chr18 (45585102-45584730)
               

               
               29-304, gnl|dasNov1|scaffold_116781 (7377-7752)
               

               
               29-304, gnl|echTel1|scaffold_292437 (44274-44634)
               

               
               29-304, gnl|hg17|chr11 (46982776-46983148)
               

               
               29-304, gnl|Hg17|chr11 (46983230-46982946)
               

               
               29-304, gnl|loxAfr1|scaffold_30772 (14330-14680)
               

               
               29-304, gnl|mm7|chr2 (91262637-91262263)
               

               
               29-304, gnl|Mm7|chr2 (91262187-91262423)
               

               
               29-304, gnl|monDom2|scaffold_33 (12951237-12951563)
               

               
               29-304, gnl|oryCun1|scaffold_182299 (35068-35435)
               

               
               29-304, gnl|panTro1|chr9 (47503471-47503843)
               

               
               29-304, gnl|rheMac2|chr14 (25123331-25122958)
               

               
               29-304, gnl|rn3|chr3 (75664089-75663723)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	29-304, gnl\|bosTau2\|chr15 (49262260-49262521)
	29-304, gnl\|canFam2\|chr18 (45585102-45584730)
	29-304, gnl\|dasNov1\|scaffold_116781 (7377-7752)
	29-304, gnl\|echTel1\|scaffold_292437 (44274-44634)
	29-304, gnl\|hg17\|chr11 (46982776-46983148)
	29-304, gnl\|Hg17\|chr11 (46983230-46982946)
	29-304, gnl\|loxAfr1\|scaffold_30772 (14330-14680)
	29-304, gnl\|mm7\|chr2 (91262637-91262263)
	29-304, gnl\|Mm7\|chr2 (91262187-91262423)
	29-304, gnl\|monDom2\|scaffold_33 (12951237-12951563)
	29-304, gnl\|oryCun1\|scaffold_182299 (35068-35435)
	29-304, gnl\|panTro1\|chr9 (47503471-47503843)
	29-304, gnl\|rheMac2\|chr14 (25123331-25122958)
	29-304, gnl\|rn3\|chr3 (75664089-75663723)