Non-Coding RNA Search

rcbl_0267.y1

Sequence:


               
               TGTTTTGAAGTGACTATTGAACTAGGTTGCATAAAATACCCATTTGAGAAAGATCTGCCA
AAATTTTGGGAACAGAATAGAAGATCTCTAATCCAGTTTATGAAACAGGTTCATCAGGGT
GTCAAAGGATTCGTCCTAGATGCCACCGATGGCAGAGGTATATTAAATGCCACCATTAGT
GTTGCTGAAATTAATCACCCAGTAACTACTTACAAAACTGGTGATTACTGGCGTCTCCTG
GTTCCAGGAACTTATAAAATCACAGCATCTGCTCGAGGGTATAATCCCGTTACCAAGAAT
GTGACCGTAAAGAGTGAAGGTGCTGTTCAGGTCAACTTCACACTTGTTCGATCTTCAACA
GATTCAAACAATGAATCAAAGAAAGGCAAGGGGGACAGCACCAACGCTGATGATGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTTGAAGTGACTATTGAACTAGGTTGCATAAAATACCCATTTGAGAAAGATCTGCCA
AAATTTTGGGAACAGAATAGAAGATCTCTAATCCAGTTTATGAAACAGGTTCATCAGGGT
GTCAAAGGATTCGTCCTAGATGCCACCGATGGCAGAGGTATATTAAATGCCACCATTAGT
GTTGCTGAAATTAATCACCCAGTAACTACTTACAAAACTGGTGATTACTGGCGTCTCCTG
GTTCCAGGAACTTATAAAATCACAGCATCTGCTCGAGGGTATAATCCCGTTACCAAGAAT
GTGACCGTAAAGAGTGAAGGTGCTGTTCAGGTCAACTTCACACTTGTTCGATCTTCAACA
GATTCAAACAATGAATCAAAGAAAGGCAAGGGGGACAGCACCAACGCTGATGATGCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               106-207, + strand, RNAz p=0.980313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-207, + strand, RNAz p=0.980313

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               106-280, gnl|bosTau2|chr19 (15931701-15931527)
               

               
               106-280, gnl|canFam2|chr9 (47771681-47771875)
               

               
               106-280, gnl|danRer3|chr15 (31900125-31899948)
               

               
               106-280, gnl|dasNov1|scaffold_206537 (4310-4116)
               

               
               106-280, gnl|echTel1|scaffold_277559 (1014-824)
               

               
               106-280, gnl|fr1|chrUn (190770192-190770013)
               

               
               106-280, gnl|galGal2|chr19 (5842046-5842227)
               

               
               106-280, gnl|hg17|chr17 (25794930-25795124)
               

               
               106-280, gnl|Hg17|chr17 (25794943-25795117)
               

               
               106-280, gnl|loxAfr1|scaffold_4002 (24650-24459)
               

               
               106-280, gnl|mm7|chr11 (76881551-76881357)
               

               
               106-280, gnl|Mm7|chr11 (76881536-76881362)
               

               
               106-280, gnl|monDom2|scaffold_86 (892634-892828)
               

               
               106-280, gnl|oryCun1|scaffold_179807 (3907-4101)
               

               
               106-280, gnl|panTro1|chr19 (29157387-29157585)
               

               
               106-280, gnl|rheMac2|chr16 (25688309-25688503)
               

               
               106-280, gnl|rn3|chr10 (67385733-67385927)
               

               
               106-280, gnl|tetNig1|chr10 (10085665-10085483)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-280, gnl|bosTau2|chr19 (15931701-15931527)
               

               
               106-280, gnl|canFam2|chr9 (47771681-47771875)
               

               
               106-280, gnl|danRer3|chr15 (31900125-31899948)
               

               
               106-280, gnl|dasNov1|scaffold_206537 (4310-4116)
               

               
               106-280, gnl|echTel1|scaffold_277559 (1014-824)
               

               
               106-280, gnl|fr1|chrUn (190770192-190770013)
               

               
               106-280, gnl|galGal2|chr19 (5842046-5842227)
               

               
               106-280, gnl|hg17|chr17 (25794930-25795124)
               

               
               106-280, gnl|Hg17|chr17 (25794943-25795117)
               

               
               106-280, gnl|loxAfr1|scaffold_4002 (24650-24459)
               

               
               106-280, gnl|mm7|chr11 (76881551-76881357)
               

               
               106-280, gnl|Mm7|chr11 (76881536-76881362)
               

               
               106-280, gnl|monDom2|scaffold_86 (892634-892828)
               

               
               106-280, gnl|oryCun1|scaffold_179807 (3907-4101)
               

               
               106-280, gnl|panTro1|chr19 (29157387-29157585)
               

               
               106-280, gnl|rheMac2|chr16 (25688309-25688503)
               

               
               106-280, gnl|rn3|chr10 (67385733-67385927)
               

               
               106-280, gnl|tetNig1|chr10 (10085665-10085483)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	106-280, gnl\|bosTau2\|chr19 (15931701-15931527)
	106-280, gnl\|canFam2\|chr9 (47771681-47771875)
	106-280, gnl\|danRer3\|chr15 (31900125-31899948)
	106-280, gnl\|dasNov1\|scaffold_206537 (4310-4116)
	106-280, gnl\|echTel1\|scaffold_277559 (1014-824)
	106-280, gnl\|fr1\|chrUn (190770192-190770013)
	106-280, gnl\|galGal2\|chr19 (5842046-5842227)
	106-280, gnl\|hg17\|chr17 (25794930-25795124)
	106-280, gnl\|Hg17\|chr17 (25794943-25795117)
	106-280, gnl\|loxAfr1\|scaffold_4002 (24650-24459)
	106-280, gnl\|mm7\|chr11 (76881551-76881357)
	106-280, gnl\|Mm7\|chr11 (76881536-76881362)
	106-280, gnl\|monDom2\|scaffold_86 (892634-892828)
	106-280, gnl\|oryCun1\|scaffold_179807 (3907-4101)
	106-280, gnl\|panTro1\|chr19 (29157387-29157585)
	106-280, gnl\|rheMac2\|chr16 (25688309-25688503)
	106-280, gnl\|rn3\|chr10 (67385733-67385927)
	106-280, gnl\|tetNig1\|chr10 (10085665-10085483)