Non-Coding RNA Search

rcbr0_001140.y1

Sequence:


               
               GGCCGGGCTTGCGCATGCGCCACTTAGTCCTGAGTTGTCTGGTCGTGGAGCGGCGACCCC
GGTCCTAGGGAAGTCCAGATGAAAAGAGTCCTGATGCGTCCAGTTCCAGCCCAGTAAAAC
ATGGAGAGGAAGAGCTCATCCAGAGAGGGCCCTAGAAGGCTCTCGGCCAAACTAAGCAAA
GGCACAGAGATGAAAAAAGTGTCTCGTCAACTCGGCATGGCAGCTGCTGAGTCAGATAAG
GACTCTGGATTTTCAGATGGGAGCTCAGAATGCCTGAGCTCGGCAGAGCAGATGGAGTCC
GAGGACGTGCTGGGCGCCTTAGGCTGGAGCCCAGAGGACCGGCCGAGGCCGAGCTCCAAG
CCTGTGAGCGCTGCCTTCCCGACGCTGTCCCCCATGGTTGTCATGAAGAACGTGCTGGTC
AAACAGGTGAGGAGGGCTCATCTCTCCTGACTTCTTCAGACTAGAGTCTCTGAGCTGCCT
GTGTCCAGAGCCTCTCCCTCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGGGCTTGCGCATGCGCCACTTAGTCCTGAGTTGTCTGGTCGTGGAGCGGCGACCCC
GGTCCTAGGGAAGTCCAGATGAAAAGAGTCCTGATGCGTCCAGTTCCAGCCCAGTAAAAC
ATGGAGAGGAAGAGCTCATCCAGAGAGGGCCCTAGAAGGCTCTCGGCCAAACTAAGCAAA
GGCACAGAGATGAAAAAAGTGTCTCGTCAACTCGGCATGGCAGCTGCTGAGTCAGATAAG
GACTCTGGATTTTCAGATGGGAGCTCAGAATGCCTGAGCTCGGCAGAGCAGATGGAGTCC
GAGGACGTGCTGGGCGCCTTAGGCTGGAGCCCAGAGGACCGGCCGAGGCCGAGCTCCAAG
CCTGTGAGCGCTGCCTTCCCGACGCTGTCCCCCATGGTTGTCATGAAGAACGTGCTGGTC
AAACAGGTGAGGAGGGCTCATCTCTCCTGACTTCTTCAGACTAGAGTCTCTGAGCTGCCT
GTGTCCAGAGCCTCTCCCTCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61855752|ref|XP_582532.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61855752|ref|XP_582532.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               254-372, + strand, RNAz p=0.846191
               

               
               254-356, + strand, RNAz p=0.928945

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-372, + strand, RNAz p=0.846191
               

               
               254-356, + strand, RNAz p=0.928945

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               254-495, gnl|bosTau2|chr10 (61823987-61824230)
               

               
               254-495, gnl|canFam2|chr8 (52977568-52977771)
               

               
               254-495, gnl|danRer3|chr17 (46283431-46283226)
               

               
               254-495, gnl|echTel1|scaffold_257802 (4997-5190)
               

               
               254-495, gnl|galGal2|chr5 (35908995-35909186)
               

               
               254-495, gnl|hg17|chr14 (76645894-76646097)
               

               
               254-495, gnl|Hg17|chr14 (76645905-76646157)
               

               
               254-495, gnl|loxAfr1|scaffold_15326 (6583-6786)
               

               
               254-495, gnl|mm7|chr12 (84962857-84963057)
               

               
               254-495, gnl|Mm7|chr12 (84962868-84963115)
               

               
               254-495, gnl|monDom2|scaffold_8 (56478715-56478516)
               

               
               254-495, gnl|panTro1|chr15 (76701882-76702085)
               

               
               254-495, gnl|rheMac2|chr7 (140251293-140251496)
               

               
               254-495, gnl|rn3|chr6 (111096776-111096977)
               

               
               254-495, gnl|tetNig1|chr14 (7158361-7158547)
               

               
               254-495, gnl|xenTro1|scaffold_170 (107142-107314)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               254-495, gnl|bosTau2|chr10 (61823987-61824230)
               

               
               254-495, gnl|canFam2|chr8 (52977568-52977771)
               

               
               254-495, gnl|danRer3|chr17 (46283431-46283226)
               

               
               254-495, gnl|echTel1|scaffold_257802 (4997-5190)
               

               
               254-495, gnl|galGal2|chr5 (35908995-35909186)
               

               
               254-495, gnl|hg17|chr14 (76645894-76646097)
               

               
               254-495, gnl|Hg17|chr14 (76645905-76646157)
               

               
               254-495, gnl|loxAfr1|scaffold_15326 (6583-6786)
               

               
               254-495, gnl|mm7|chr12 (84962857-84963057)
               

               
               254-495, gnl|Mm7|chr12 (84962868-84963115)
               

               
               254-495, gnl|monDom2|scaffold_8 (56478715-56478516)
               

               
               254-495, gnl|panTro1|chr15 (76701882-76702085)
               

               
               254-495, gnl|rheMac2|chr7 (140251293-140251496)
               

               
               254-495, gnl|rn3|chr6 (111096776-111096977)
               

               
               254-495, gnl|tetNig1|chr14 (7158361-7158547)
               

               
               254-495, gnl|xenTro1|scaffold_170 (107142-107314)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.127975)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.127975)

	254-372, + strand, RNAz p=0.846191
	254-356, + strand, RNAz p=0.928945

	254-495, gnl\|bosTau2\|chr10 (61823987-61824230)
	254-495, gnl\|canFam2\|chr8 (52977568-52977771)
	254-495, gnl\|danRer3\|chr17 (46283431-46283226)
	254-495, gnl\|echTel1\|scaffold_257802 (4997-5190)
	254-495, gnl\|galGal2\|chr5 (35908995-35909186)
	254-495, gnl\|hg17\|chr14 (76645894-76646097)
	254-495, gnl\|Hg17\|chr14 (76645905-76646157)
	254-495, gnl\|loxAfr1\|scaffold_15326 (6583-6786)
	254-495, gnl\|mm7\|chr12 (84962857-84963057)
	254-495, gnl\|Mm7\|chr12 (84962868-84963115)
	254-495, gnl\|monDom2\|scaffold_8 (56478715-56478516)
	254-495, gnl\|panTro1\|chr15 (76701882-76702085)
	254-495, gnl\|rheMac2\|chr7 (140251293-140251496)
	254-495, gnl\|rn3\|chr6 (111096776-111096977)
	254-495, gnl\|tetNig1\|chr14 (7158361-7158547)
	254-495, gnl\|xenTro1\|scaffold_170 (107142-107314)