Non-Coding RNA Search

rcbr0_001428.y1

Sequence:


               
               ATGTCATTGTTCCTAGGAAAATAAAGTTTCAACTGTTTATTTGGGGAGGGGGATTTCCTT
ACCTTCATTCCTACAATGCCTGGGGAGGGAGGTGCTTTTAGAAAATGCCTACCTCCCTTG
AATGGCCTGTGCATGAGCCAGTGATGTTTGTCCCTGTCTCACAGAGATCAGCAGGATGGG
TTACTTAAGGGTAGCAAATGAGTGAACCAGAGAGCAGCAGAGCTAGAGCCTGCAAGCCAA
GCCGCGCCCCTTTTCCATCCTGCATTGTGACAGCACGACTTCCTCCTTCCTTCCTGGGGA
GATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTCATTGTTCCTAGGAAAATAAAGTTTCAACTGTTTATTTGGGGAGGGGGATTTCCTT
ACCTTCATTCCTACAATGCCTGGGGAGGGAGGTGCTTTTAGAAAATGCCTACCTCCCTTG
AATGGCCTGTGCATGAGCCAGTGATGTTTGTCCCTGTCTCACAGAGATCAGCAGGATGGG
TTACTTAAGGGTAGCAAATGAGTGAACCAGAGAGCAGCAGAGCTAGAGCCTGCAAGCCAA
GCCGCGCCCCTTTTCCATCCTGCATTGTGACAGCACGACTTCCTCCTTCCTTCCTGGGGA
GATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               36-151, + strand, RNAz p=0.546121

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-151, + strand, RNAz p=0.546121

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-304, gnl|bosTau2|chr10 (58582364-58582664)
               

               
               1-304, gnl|canFam2|chr8 (48292878-48293101)
               

               
               1-304, gnl|dasNov1|scaffold_39822 (12412-12638)
               

               
               1-304, gnl|echTel1|scaffold_310784 (54186-54415)
               

               
               1-304, gnl|galGal2|chr5 (24227523-24227311)
               

               
               1-304, gnl|hg17|chr14 (71276003-71276226)
               

               
               1-304, gnl|Hg17|chr14 (71276036-71276344)
               

               
               1-304, gnl|loxAfr1|scaffold_8296 (5319-5090)
               

               
               1-304, gnl|mm7|chr12 (80443033-80443243)
               

               
               1-304, gnl|monDom2|scaffold_8 (63973426-63973209)
               

               
               1-304, gnl|oryCun1|scaffold_175861 (1943-1708)
               

               
               1-304, gnl|panTro1|chr15 (71054094-71054317)
               

               
               1-304, gnl|rheMac2|chr7 (134832821-134833044)
               

               
               1-304, gnl|rn3|chr6 (106286630-106286788)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-304, gnl|bosTau2|chr10 (58582364-58582664)
               

               
               1-304, gnl|canFam2|chr8 (48292878-48293101)
               

               
               1-304, gnl|dasNov1|scaffold_39822 (12412-12638)
               

               
               1-304, gnl|echTel1|scaffold_310784 (54186-54415)
               

               
               1-304, gnl|galGal2|chr5 (24227523-24227311)
               

               
               1-304, gnl|hg17|chr14 (71276003-71276226)
               

               
               1-304, gnl|Hg17|chr14 (71276036-71276344)
               

               
               1-304, gnl|loxAfr1|scaffold_8296 (5319-5090)
               

               
               1-304, gnl|mm7|chr12 (80443033-80443243)
               

               
               1-304, gnl|monDom2|scaffold_8 (63973426-63973209)
               

               
               1-304, gnl|oryCun1|scaffold_175861 (1943-1708)
               

               
               1-304, gnl|panTro1|chr15 (71054094-71054317)
               

               
               1-304, gnl|rheMac2|chr7 (134832821-134833044)
               

               
               1-304, gnl|rn3|chr6 (106286630-106286788)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.127975)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.127975)

	1-304, gnl\|bosTau2\|chr10 (58582364-58582664)
	1-304, gnl\|canFam2\|chr8 (48292878-48293101)
	1-304, gnl\|dasNov1\|scaffold_39822 (12412-12638)
	1-304, gnl\|echTel1\|scaffold_310784 (54186-54415)
	1-304, gnl\|galGal2\|chr5 (24227523-24227311)
	1-304, gnl\|hg17\|chr14 (71276003-71276226)
	1-304, gnl\|Hg17\|chr14 (71276036-71276344)
	1-304, gnl\|loxAfr1\|scaffold_8296 (5319-5090)
	1-304, gnl\|mm7\|chr12 (80443033-80443243)
	1-304, gnl\|monDom2\|scaffold_8 (63973426-63973209)
	1-304, gnl\|oryCun1\|scaffold_175861 (1943-1708)
	1-304, gnl\|panTro1\|chr15 (71054094-71054317)
	1-304, gnl\|rheMac2\|chr7 (134832821-134833044)
	1-304, gnl\|rn3\|chr6 (106286630-106286788)