Non-Coding RNA Search

rcbr0_004578.y1

Sequence:


               
               acctacaccacagctcacggcaaagccaggtccttaacccactaagagaggccaggatgg
aacctgcatcctcagggatgatcgtggggttcattacGACGGGACCTCCCGGTTTTGGTT
AGCTTTTAACTACATCTCCATTTTCTCGTCTGTGAAGAATCATAACTACCAACCTCAGAA
CTGCCATGTGGATTAAGAGAGACAATGTATACTTAGCATGGTGCCTGGCATATGGTCAGG
GCTAGGAAACACGAGTGGGTATTATGATCATTAAAAATAAGCTCTATGAGCAACCAGAAT
GCTCATATATGGCCGGTATGGAATGCAAAAATGATACAGTCTgcttgggaaaacagtgga
ccagtttcttataaaattaaatacaggcttaccatacaacccagcactcccacttctgga
tatttaaccaagtgaagtgaaaacttatgttcatacaaacacctgcccatgaatgtttat
ggcagctttattcataatggccccaaactagaaacagcccagatgtccttc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               acctacaccacagctcacggcaaagccaggtccttaacccactaagagaggccaggatgg
aacctgcatcctcagggatgatcgtggggttcattacGACGGGACCTCCCGGTTTTGGTT
AGCTTTTAACTACATCTCCATTTTCTCGTCTGTGAAGAATCATAACTACCAACCTCAGAA
CTGCCATGTGGATTAAGAGAGACAATGTATACTTAGCATGGTGCCTGGCATATGGTCAGG
GCTAGGAAACACGAGTGGGTATTATGATCATTAAAAATAAGCTCTATGAGCAACCAGAAT
GCTCATATATGGCCGGTATGGAATGCAAAAATGATACAGTCTgcttgggaaaacagtgga
ccagtttcttataaaattaaatacaggcttaccatacaacccagcactcccacttctgga
tatttaaccaagtgaagtgaaaacttatgttcatacaaacacctgcccatgaatgtttat
ggcagctttattcataatggccccaaactagaaacagcccagatgtccttc

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               369-466, - strand, RNAz p=0.999482

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               369-466, - strand, RNAz p=0.999482

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               371-486, - strand, RNAmicro p=0.998834

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               371-486, - strand, RNAmicro p=0.998834

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               211-466, gnl|bosTau2|chr19 (16577353-16577609)
               

               
               211-466, gnl|canFam2|chr9 (48397303-48396881)
               

               
               211-466, gnl|dasNov1|scaffold_139409 (3437-3883)
               

               
               211-466, gnl|hg17|chr17 (567549-567990)
               

               
               211-466, gnl|Hg17|chr17 (568053-567791)
               

               
               211-466, gnl|panTro1|chr19 (667325-667763)
               

               
               211-466, gnl|rheMac2|chr16 (508305-508750)
               

               
               211-466, gnl|rn3|chr10 (63551700-63552074)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-466, gnl|bosTau2|chr19 (16577353-16577609)
               

               
               211-466, gnl|canFam2|chr9 (48397303-48396881)
               

               
               211-466, gnl|dasNov1|scaffold_139409 (3437-3883)
               

               
               211-466, gnl|hg17|chr17 (567549-567990)
               

               
               211-466, gnl|Hg17|chr17 (568053-567791)
               

               
               211-466, gnl|panTro1|chr19 (667325-667763)
               

               
               211-466, gnl|rheMac2|chr16 (508305-508750)
               

               
               211-466, gnl|rn3|chr10 (63551700-63552074)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.127975)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.127975)

	211-466, gnl\|bosTau2\|chr19 (16577353-16577609)
	211-466, gnl\|canFam2\|chr9 (48397303-48396881)
	211-466, gnl\|dasNov1\|scaffold_139409 (3437-3883)
	211-466, gnl\|hg17\|chr17 (567549-567990)
	211-466, gnl\|Hg17\|chr17 (568053-567791)
	211-466, gnl\|panTro1\|chr19 (667325-667763)
	211-466, gnl\|rheMac2\|chr16 (508305-508750)
	211-466, gnl\|rn3\|chr10 (63551700-63552074)