Non-Coding RNA Search

rcbr0_011193.y1

Sequence:


               
               GTAAATAGGAAGTTAAATGTGCATTTGCAGAATAATACATAGGTTTGAAATTTATTGATG
GAATTGTTGTATATCAATAAGAAATAAATCTGAGCTTCAGATACATTTCTAAATAAATAA
TTGTCCTCCCCTCTGCTGTATGATTTCACTTGCATAGTGATTTATTTTCAAGAATAGCAT
GGCTGCTTGCTTTCTGAATTGATTTGTAAAGACGGCTGAGGGAAAAGCAGTCCATGAATA
GAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAATAGGAAGTTAAATGTGCATTTGCAGAATAATACATAGGTTTGAAATTTATTGATG
GAATTGTTGTATATCAATAAGAAATAAATCTGAGCTTCAGATACATTTCTAAATAAATAA
TTGTCCTCCCCTCTGCTGTATGATTTCACTTGCATAGTGATTTATTTTCAAGAATAGCAT
GGCTGCTTGCTTTCTGAATTGATTTGTAAAGACGGCTGAGGGAAAAGCAGTCCATGAATA
GAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-234, + strand, RNAz p=0.860343

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-234, + strand, RNAz p=0.860343

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-245, gnl|bosTau2|chr6 (56498780-56499024)
               

               
               1-245, gnl|canFam2|chr32 (12558883-12559070)
               

               
               1-245, gnl|dasNov1|scaffold_28476 (43426-43233)
               

               
               1-245, gnl|echTel1|scaffold_281007 (28748-28918)
               

               
               1-245, gnl|hg17|chr4 (87304605-87304799)
               

               
               1-245, gnl|Hg17|chr4 (87304895-87304651)
               

               
               1-245, gnl|loxAfr1|scaffold_605 (38976-38782)
               

               
               1-245, gnl|mm7|chr5 (102108826-102109005)
               

               
               1-245, gnl|Mm7|chr5 (102109102-102108872)
               

               
               1-245, gnl|monDom2|scaffold_37 (16720202-16720032)
               

               
               1-245, gnl|panTro1|chr3_random (838617-838423)
               

               
               1-245, gnl|rheMac2|chr5 (78971619-78971813)
               

               
               1-245, gnl|rn3|chr14 (8003487-8003308)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-245, gnl|bosTau2|chr6 (56498780-56499024)
               

               
               1-245, gnl|canFam2|chr32 (12558883-12559070)
               

               
               1-245, gnl|dasNov1|scaffold_28476 (43426-43233)
               

               
               1-245, gnl|echTel1|scaffold_281007 (28748-28918)
               

               
               1-245, gnl|hg17|chr4 (87304605-87304799)
               

               
               1-245, gnl|Hg17|chr4 (87304895-87304651)
               

               
               1-245, gnl|loxAfr1|scaffold_605 (38976-38782)
               

               
               1-245, gnl|mm7|chr5 (102108826-102109005)
               

               
               1-245, gnl|Mm7|chr5 (102109102-102108872)
               

               
               1-245, gnl|monDom2|scaffold_37 (16720202-16720032)
               

               
               1-245, gnl|panTro1|chr3_random (838617-838423)
               

               
               1-245, gnl|rheMac2|chr5 (78971619-78971813)
               

               
               1-245, gnl|rn3|chr14 (8003487-8003308)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.127975)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.127975)

	1-245, gnl\|bosTau2\|chr6 (56498780-56499024)
	1-245, gnl\|canFam2\|chr32 (12558883-12559070)
	1-245, gnl\|dasNov1\|scaffold_28476 (43426-43233)
	1-245, gnl\|echTel1\|scaffold_281007 (28748-28918)
	1-245, gnl\|hg17\|chr4 (87304605-87304799)
	1-245, gnl\|Hg17\|chr4 (87304895-87304651)
	1-245, gnl\|loxAfr1\|scaffold_605 (38976-38782)
	1-245, gnl\|mm7\|chr5 (102108826-102109005)
	1-245, gnl\|Mm7\|chr5 (102109102-102108872)
	1-245, gnl\|monDom2\|scaffold_37 (16720202-16720032)
	1-245, gnl\|panTro1\|chr3_random (838617-838423)
	1-245, gnl\|rheMac2\|chr5 (78971619-78971813)
	1-245, gnl\|rn3\|chr14 (8003487-8003308)