Non-Coding RNA Search

rche12_e4.y1

Sequence:


               
               GAAAAAAACACATAGCCATTAATTAATTAATTTGGTTCCCTTAGAGGCGCTCTTGCTGAA
AAGGTCTGTCTTTTTACCCAAAGAAGGAAGAGGTTTGATTAATTTACAGATTCTGCTCCA
GCATATTATGTAGTATTTGGGAAAATGTCAGGCTCTCATGAATTTCAAAAAAAATATCGT
GTGGGAAATTCATTTACTTGTTAATCGAATTAGTTTCCAGAAGGATGTGAGAGCTTCAGA
GGGTCTTCTGGTGGGAATCAGGTGTGTTGAGAGGCAGCGTGTCGCATAAGGAAAAAAAAC
CTGGTCTCAGAATCAGGTACTTTTGAGCTTTACTCCTGTTGGGAGACTTACTTGACCTTT
CTAGGCCTCAGTTTCTCAAGTGAGAGCCAGTTCAGATGTACAAGACTTTAATGCTCTTCA
CGCAGGGGTAGAGTCTGGTTCTTTAGTTCTGGCCCTGAGGTTCTGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAAAACACATAGCCATTAATTAATTAATTTGGTTCCCTTAGAGGCGCTCTTGCTGAA
AAGGTCTGTCTTTTTACCCAAAGAAGGAAGAGGTTTGATTAATTTACAGATTCTGCTCCA
GCATATTATGTAGTATTTGGGAAAATGTCAGGCTCTCATGAATTTCAAAAAAAATATCGT
GTGGGAAATTCATTTACTTGTTAATCGAATTAGTTTCCAGAAGGATGTGAGAGCTTCAGA
GGGTCTTCTGGTGGGAATCAGGTGTGTTGAGAGGCAGCGTGTCGCATAAGGAAAAAAAAC
CTGGTCTCAGAATCAGGTACTTTTGAGCTTTACTCCTGTTGGGAGACTTACTTGACCTTT
CTAGGCCTCAGTTTCTCAAGTGAGAGCCAGTTCAGATGTACAAGACTTTAATGCTCTTCA
CGCAGGGGTAGAGTCTGGTTCTTTAGTTCTGGCCCTGAGGTTCTGTGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               270-384, + strand, RNAz p=0.623304

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-384, + strand, RNAz p=0.623304

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               4-384, gnl|bosTau2|chr5 (48421232-48421615)
               

               
               4-384, gnl|canFam2|chr27 (20212709-20212341)
               

               
               4-384, gnl|echTel1|scaffold_22268 (1353-969)
               

               
               4-384, gnl|hg17|chr12 (31592606-31593054)
               

               
               4-384, gnl|Hg17|chr12 (31592987-31592617)
               

               
               4-384, gnl|loxAfr1|scaffold_159943 (289-713)
               

               
               4-384, gnl|panTro1|chrUn_random (35496852-35496404)
               

               
               4-384, gnl|rheMac2|chr11 (31629033-31629468)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-384, gnl|bosTau2|chr5 (48421232-48421615)
               

               
               4-384, gnl|canFam2|chr27 (20212709-20212341)
               

               
               4-384, gnl|echTel1|scaffold_22268 (1353-969)
               

               
               4-384, gnl|hg17|chr12 (31592606-31593054)
               

               
               4-384, gnl|Hg17|chr12 (31592987-31592617)
               

               
               4-384, gnl|loxAfr1|scaffold_159943 (289-713)
               

               
               4-384, gnl|panTro1|chrUn_random (35496852-35496404)
               

               
               4-384, gnl|rheMac2|chr11 (31629033-31629468)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	4-384, gnl\|bosTau2\|chr5 (48421232-48421615)
	4-384, gnl\|canFam2\|chr27 (20212709-20212341)
	4-384, gnl\|echTel1\|scaffold_22268 (1353-969)
	4-384, gnl\|hg17\|chr12 (31592606-31593054)
	4-384, gnl\|Hg17\|chr12 (31592987-31592617)
	4-384, gnl\|loxAfr1\|scaffold_159943 (289-713)
	4-384, gnl\|panTro1\|chrUn_random (35496852-35496404)
	4-384, gnl\|rheMac2\|chr11 (31629033-31629468)