Non-Coding RNA Search

rche14_o3.y1

Sequence:


               
               ATTCCCAGGCCCTGGTCCTACAGGAAAAGTCATAACTGGGAACTGCACCTCTGGCCTCCC
TCAGTGTGACTATTGTTTGTTTTCTGTTGTGCAGAAGAAGCAAGAAGAAGACGGCGGAAC
CACAGACACAGCCACCATCCTGTCCAACCAGCACGAAAAGGACAGTGGTGTGGGGCGGAC
GGATGAGAGCACGCGCAATGATGAGAGCTCGGAGCAGGAGAACAACGGCGACGACGCCCC
TGTGTCCTCCCCACCGCTGGCGGGGCAGAGGAAGCTCACATGCAGCCAAGACACCCTGGG
CAGCGGCGACCTGCCCTTCAGCAATGAGTCCTTCATCTCCGCAGACTGCGCTGACGCCGA
CTACCTGGGCATCCCGGTGGACGAATGCGAGCGCTTCCGGGAGCTGCTGGAGCTCAAGTG
CCAGGTGAAGAGCGCCAGCCCCTATAGCCTATACTACCCCAGCAGCCCCCTGGACGCCAG
CAAGAGCGACCCCGAGAGCGTGGACAAGGAGCTGGAGTTGCTCAACGAGGAGCTGCGCAG
TATCGAGCTGGAGTGCCTCAGCATCGTGCGCGCGCACAAGATGCAGCAACTCAAGGAGCA
GTACCGTGAGTCCTGGATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCCCAGGCCCTGGTCCTACAGGAAAAGTCATAACTGGGAACTGCACCTCTGGCCTCCC
TCAGTGTGACTATTGTTTGTTTTCTGTTGTGCAGAAGAAGCAAGAAGAAGACGGCGGAAC
CACAGACACAGCCACCATCCTGTCCAACCAGCACGAAAAGGACAGTGGTGTGGGGCGGAC
GGATGAGAGCACGCGCAATGATGAGAGCTCGGAGCAGGAGAACAACGGCGACGACGCCCC
TGTGTCCTCCCCACCGCTGGCGGGGCAGAGGAAGCTCACATGCAGCCAAGACACCCTGGG
CAGCGGCGACCTGCCCTTCAGCAATGAGTCCTTCATCTCCGCAGACTGCGCTGACGCCGA
CTACCTGGGCATCCCGGTGGACGAATGCGAGCGCTTCCGGGAGCTGCTGGAGCTCAAGTG
CCAGGTGAAGAGCGCCAGCCCCTATAGCCTATACTACCCCAGCAGCCCCCTGGACGCCAG
CAAGAGCGACCCCGAGAGCGTGGACAAGGAGCTGGAGTTGCTCAACGAGGAGCTGCGCAG
TATCGAGCTGGAGTGCCTCAGCATCGTGCGCGCGCACAAGATGCAGCAACTCAAGGAGCA
GTACCGTGAGTCCTGGATGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               503-621, + strand, RNAz p=0.64831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               503-621, + strand, RNAz p=0.64831

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-621, gnl|bosTau2|chr22 (21404159-21403552)
               

               
               16-621, gnl|Hg17|chr3 (73516855-73516245)
               

               
               16-621, gnl|Mm7|chr6 (101242320-101241723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-621, gnl|bosTau2|chr22 (21404159-21403552)
               

               
               16-621, gnl|Hg17|chr3 (73516855-73516245)
               

               
               16-621, gnl|Mm7|chr6 (101242320-101241723)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	16-621, gnl\|bosTau2\|chr22 (21404159-21403552)
	16-621, gnl\|Hg17\|chr3 (73516855-73516245)
	16-621, gnl\|Mm7\|chr6 (101242320-101241723)