Non-Coding RNA Search

rche19_c19.y1

Sequence:


               
               GTTCCGCTTCCGCCTCATTTCTGGCTTCTTCTGGCTTCACCCCATCTTGGGGACTCTTGG
AAAAGCTGCTCTTCCTGTCTCCCTGGTTAGGCCAGGAGCTTGTCTGCTGCAGGCCTGAGT
CACCAGAAATGGCTCTGGCTTGGCTTCAACTCTCAGCAGCCAAGGGGGGGAATGGGGGTG
GGCGTGGAGGTGGGGATGCAGACCAGTGGAAATGGCAGGGGATGGAGAAGGTGGAACCCC
TGAGGGTAGGGCATGCTTGGTTCTGAGAGGGTGGCCCCTACTCTAAGCTGTTATTATTCA
CTAGCACCTATAGAGAAAAATACAGGGATGACCCCTCTAGGTCAACAGACAACAGATTAG
AAGAAGGCAATCCCTGCTCCCCGCCCCTCTCATGGACCAACAAGATAAGTGTCCCTTCTT
TTGAGCTGATGCAGCCCAGGGCACAGGCCTTGGCTATGACGCTGGGTTTCAGCTCCCCCG
TTCCTCCCTTTGTATTAGTGCCTCCCTTCTGCAGGGCACAGGCATAGGGGGTGCCCCTGC
TCTGTCCAGGCTGAGGAAGGCAAGCTCAGAAATCCAACATCCCTGAGCTGAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCGCTTCCGCCTCATTTCTGGCTTCTTCTGGCTTCACCCCATCTTGGGGACTCTTGG
AAAAGCTGCTCTTCCTGTCTCCCTGGTTAGGCCAGGAGCTTGTCTGCTGCAGGCCTGAGT
CACCAGAAATGGCTCTGGCTTGGCTTCAACTCTCAGCAGCCAAGGGGGGGAATGGGGGTG
GGCGTGGAGGTGGGGATGCAGACCAGTGGAAATGGCAGGGGATGGAGAAGGTGGAACCCC
TGAGGGTAGGGCATGCTTGGTTCTGAGAGGGTGGCCCCTACTCTAAGCTGTTATTATTCA
CTAGCACCTATAGAGAAAAATACAGGGATGACCCCTCTAGGTCAACAGACAACAGATTAG
AAGAAGGCAATCCCTGCTCCCCGCCCCTCTCATGGACCAACAAGATAAGTGTCCCTTCTT
TTGAGCTGATGCAGCCCAGGGCACAGGCCTTGGCTATGACGCTGGGTTTCAGCTCCCCCG
TTCCTCCCTTTGTATTAGTGCCTCCCTTCTGCAGGGCACAGGCATAGGGGGTGCCCCTGC
TCTGTCCAGGCTGAGGAAGGCAAGCTCAGAAATCCAACATCCCTGAGCTGAGCAG

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               90-502, gnl|bosTau2|chr5 (22358070-22358463)
               

               
               90-502, gnl|canFam2|chr27 (8490929-8490414)
               

               
               90-502, gnl|dasNov1|scaffold_44695 (4216-4594)
               

               
               90-502, gnl|echTel1|scaffold_290493 (7287-6830)
               

               
               90-502, gnl|hg17|chr12 (47785159-47785692)
               

               
               90-502, gnl|Hg17|chr12 (47785753-47785371)
               

               
               90-502, gnl|loxAfr1|scaffold_2320 (83255-83772)
               

               
               90-502, gnl|mm7|chr15 (98897998-98898558)
               

               
               90-502, gnl|Mm7|chr15 (98898607-98898184)
               

               
               90-502, gnl|panTro1|chr10 (48960584-48961117)
               

               
               90-502, gnl|rheMac2|chr11 (46233139-46233658)
               

               
               90-502, gnl|rn3|chr7 (137763752-137764287)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-502, gnl|bosTau2|chr5 (22358070-22358463)
               

               
               90-502, gnl|canFam2|chr27 (8490929-8490414)
               

               
               90-502, gnl|dasNov1|scaffold_44695 (4216-4594)
               

               
               90-502, gnl|echTel1|scaffold_290493 (7287-6830)
               

               
               90-502, gnl|hg17|chr12 (47785159-47785692)
               

               
               90-502, gnl|Hg17|chr12 (47785753-47785371)
               

               
               90-502, gnl|loxAfr1|scaffold_2320 (83255-83772)
               

               
               90-502, gnl|mm7|chr15 (98897998-98898558)
               

               
               90-502, gnl|Mm7|chr15 (98898607-98898184)
               

               
               90-502, gnl|panTro1|chr10 (48960584-48961117)
               

               
               90-502, gnl|rheMac2|chr11 (46233139-46233658)
               

               
               90-502, gnl|rn3|chr7 (137763752-137764287)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	90-502, gnl\|bosTau2\|chr5 (22358070-22358463)
	90-502, gnl\|canFam2\|chr27 (8490929-8490414)
	90-502, gnl\|dasNov1\|scaffold_44695 (4216-4594)
	90-502, gnl\|echTel1\|scaffold_290493 (7287-6830)
	90-502, gnl\|hg17\|chr12 (47785159-47785692)
	90-502, gnl\|Hg17\|chr12 (47785753-47785371)
	90-502, gnl\|loxAfr1\|scaffold_2320 (83255-83772)
	90-502, gnl\|mm7\|chr15 (98897998-98898558)
	90-502, gnl\|Mm7\|chr15 (98898607-98898184)
	90-502, gnl\|panTro1\|chr10 (48960584-48961117)
	90-502, gnl\|rheMac2\|chr11 (46233139-46233658)
	90-502, gnl\|rn3\|chr7 (137763752-137764287)