Non-Coding RNA Search

rche20_k21.y1

Sequence:


               
               AGGATTCTCTCTCTTAATTTCCTTATTTTGTTCTTTGTGGTCTTTCTTTGATTACCCTTT
AAATGGTAATGTTCCCCAGGTTCTGTTTTTAGTCCTCTTCTCTTGATCATACTGAGAACT
TCCTTGGGTGATCTTCTTTTTCCATTTCTTGCCTTTGACTAGCCTCCGTATCACAGGTTG
TTGATCAGATACTCACAGGGGCAAGATGGCCAACATAAATGAGTGAAAAAGAGGTGCAGA
GTTGGGAATAGTGGGAACCTGGTGAAGTAAAGAATCAATGCTGggagttcccgttgtggc
gcagtgattaacgaatcggactaggaacatgaggttgcgggttcggtccctgcccttgct
cagtgggttaacgatccggcgttgccgtgagctgtggtgtaggttgcagaggtggctcgg
atcccaccttgctgtggctctggtgtaggccggtggctatagctccgattcgactcctag
cctgggaatctccatatgctgcagaagtggcccaaagaaatagcaaaaagacCAAAAAAA
AAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGATTCTCTCTCTTAATTTCCTTATTTTGTTCTTTGTGGTCTTTCTTTGATTACCCTTT
AAATGGTAATGTTCCCCAGGTTCTGTTTTTAGTCCTCTTCTCTTGATCATACTGAGAACT
TCCTTGGGTGATCTTCTTTTTCCATTTCTTGCCTTTGACTAGCCTCCGTATCACAGGTTG
TTGATCAGATACTCACAGGGGCAAGATGGCCAACATAAATGAGTGAAAAAGAGGTGCAGA
GTTGGGAATAGTGGGAACCTGGTGAAGTAAAGAATCAATGCTGggagttcccgttgtggc
gcagtgattaacgaatcggactaggaacatgaggttgcgggttcggtccctgcccttgct
cagtgggttaacgatccggcgttgccgtgagctgtggtgtaggttgcagaggtggctcgg
atcccaccttgctgtggctctggtgtaggccggtggctatagctccgattcgactcctag
cctgggaatctccatatgctgcagaagtggcccaaagaaatagcaaaaagacCAAAAAAA
AAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               53-167, + strand, RNAz p=0.606978

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-167, + strand, RNAz p=0.606978

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               53-226, gnl|bosTau2|chr13 (11187572-11187746)
               

               
               53-226, gnl|Hg17|chr10 (22039063-22039319)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-226, gnl|bosTau2|chr13 (11187572-11187746)
               

               
               53-226, gnl|Hg17|chr10 (22039063-22039319)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	53-226, gnl\|bosTau2\|chr13 (11187572-11187746)
	53-226, gnl\|Hg17\|chr10 (22039063-22039319)