Non-Coding RNA Search

rche20_m9.y1

Sequence:


               
               TTGttgtggttttaatttgcatttccttaatggctaataatgttaagcatcttttaatgt
gcttatttgccatatgtatttcctctttagtgaaatgtctgttcatatctttgcccattt
tctaattagaccttttgggttttatctcttgagtttgagagttctttatatattgtaatt
actaatcttttgttaggtatgtggtttgcaaatattttATCTGCCTCTAACTCATTTTTT
TTCATCCTTTTAACAAGGTCTTATATAAAGCAAAAGTTTTAAATTCTGATGAGGTCCAGT
TTATCAATTTTTTTTTCTTTTCTGGATTGTGCTTTTTTGATGGTGAGTCTAAAACTTTTT
GTCTAGCTTAGATCTTGAAAATGTTCTCTTAATTTTTGAGAGTCTTCTCATTTTGAATTA
ATTTCTTGTGTAAGATGTTAGGTTTAGGTTGAGGCTCCTTTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGttgtggttttaatttgcatttccttaatggctaataatgttaagcatcttttaatgt
gcttatttgccatatgtatttcctctttagtgaaatgtctgttcatatctttgcccattt
tctaattagaccttttgggttttatctcttgagtttgagagttctttatatattgtaatt
actaatcttttgttaggtatgtggtttgcaaatattttATCTGCCTCTAACTCATTTTTT
TTCATCCTTTTAACAAGGTCTTATATAAAGCAAAAGTTTTAAATTCTGATGAGGTCCAGT
TTATCAATTTTTTTTTCTTTTCTGGATTGTGCTTTTTTGATGGTGAGTCTAAAACTTTTT
GTCTAGCTTAGATCTTGAAAATGTTCTCTTAATTTTTGAGAGTCTTCTCATTTTGAATTA
ATTTCTTGTGTAAGATGTTAGGTTTAGGTTGAGGCTCCTTTTGTT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               5-336, gnl|bosTau2|chr10 (20125036-20124717)
               

               
               5-336, gnl|canFam2|chr30 (6213038-6213489)
               

               
               5-336, gnl|dasNov1|scaffold_160646 (7089-6666)
               

               
               5-336, gnl|echTel1|scaffold_50898 (1883-1408)
               

               
               5-336, gnl|hg17|chr15 (33695507-33695872)
               

               
               5-336, gnl|Hg17|chr15 (33695951-33695634)
               

               
               5-336, gnl|loxAfr1|scaffold_1421 (4174-4640)
               

               
               5-336, gnl|mm7|chr2 (114473236-114473622)
               

               
               5-336, gnl|Mm7|chr2 (114473700-114473356)
               

               
               5-336, gnl|panTro1|chr16 (33485929-33486294)
               

               
               5-336, gnl|rheMac2|chr7 (13969678-13970043)
               

               
               5-336, gnl|rn3|chr3 (100522950-100523345)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-336, gnl|bosTau2|chr10 (20125036-20124717)
               

               
               5-336, gnl|canFam2|chr30 (6213038-6213489)
               

               
               5-336, gnl|dasNov1|scaffold_160646 (7089-6666)
               

               
               5-336, gnl|echTel1|scaffold_50898 (1883-1408)
               

               
               5-336, gnl|hg17|chr15 (33695507-33695872)
               

               
               5-336, gnl|Hg17|chr15 (33695951-33695634)
               

               
               5-336, gnl|loxAfr1|scaffold_1421 (4174-4640)
               

               
               5-336, gnl|mm7|chr2 (114473236-114473622)
               

               
               5-336, gnl|Mm7|chr2 (114473700-114473356)
               

               
               5-336, gnl|panTro1|chr16 (33485929-33486294)
               

               
               5-336, gnl|rheMac2|chr7 (13969678-13970043)
               

               
               5-336, gnl|rn3|chr3 (100522950-100523345)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	5-336, gnl\|bosTau2\|chr10 (20125036-20124717)
	5-336, gnl\|canFam2\|chr30 (6213038-6213489)
	5-336, gnl\|dasNov1\|scaffold_160646 (7089-6666)
	5-336, gnl\|echTel1\|scaffold_50898 (1883-1408)
	5-336, gnl\|hg17\|chr15 (33695507-33695872)
	5-336, gnl\|Hg17\|chr15 (33695951-33695634)
	5-336, gnl\|loxAfr1\|scaffold_1421 (4174-4640)
	5-336, gnl\|mm7\|chr2 (114473236-114473622)
	5-336, gnl\|Mm7\|chr2 (114473700-114473356)
	5-336, gnl\|panTro1\|chr16 (33485929-33486294)
	5-336, gnl\|rheMac2\|chr7 (13969678-13970043)
	5-336, gnl\|rn3\|chr3 (100522950-100523345)