Non-Coding RNA Search

rche21_a9.y1

Sequence:


               
               AAAATGCATGCTGATAATAACATCACTAAAACCCGATATAGGCTGCATGCTTCCCAGGAT
GAATTCTCAGGCCTCGGGTTTCAACCAGGCCCCAGCCAGCCCTGTCAGAGGCAGATGGTC
CCCCAAGAAGAGATTAAAAGTACATCAGCAAAGAACAGCATGGTCAGCCTAGCTGGCCAG
GCCCCTAATTTCTCCAGGCTCCTGTCTAATATAACTGTCATGGAAGGTTCTCCAGTGACT
TTGGAAGTTGAAGTAACAGGATTTCCAGAGCCTACACTAACATGGTGGGTAGCCTATAAT
GACAAGCCATAAGCAGAAACAAATTGAGTCACTGAGCAAATACATTCTGTGTGTACTAAC
TTAAACATTTAGGGACAGCTGATTAATATTCTATGTCACTGCAACTCTGCATGATTTGGC
CTCACGTCAAACCCCCAACTCTCACATTGGTAGCCATATGGCTAATACCTTTAATTAAAA
GTAACCATATAAAAATAATTTAAACAACTCCAAAAGCACTGCAACTTAGCTGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATGCATGCTGATAATAACATCACTAAAACCCGATATAGGCTGCATGCTTCCCAGGAT
GAATTCTCAGGCCTCGGGTTTCAACCAGGCCCCAGCCAGCCCTGTCAGAGGCAGATGGTC
CCCCAAGAAGAGATTAAAAGTACATCAGCAAAGAACAGCATGGTCAGCCTAGCTGGCCAG
GCCCCTAATTTCTCCAGGCTCCTGTCTAATATAACTGTCATGGAAGGTTCTCCAGTGACT
TTGGAAGTTGAAGTAACAGGATTTCCAGAGCCTACACTAACATGGTGGGTAGCCTATAAT
GACAAGCCATAAGCAGAAACAAATTGAGTCACTGAGCAAATACATTCTGTGTGTACTAAC
TTAAACATTTAGGGACAGCTGATTAATATTCTATGTCACTGCAACTCTGCATGATTTGGC
CTCACGTCAAACCCCCAACTCTCACATTGGTAGCCATATGGCTAATACCTTTAATTAAAA
GTAACCATATAAAAATAATTTAAACAACTCCAAAAGCACTGCAACTTAGCTGTGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-319, + strand, RNAz p=0.681573

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, + strand, RNAz p=0.681573

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_173648, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_173648, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-529, gnl|bosTau2|chr2 (7536776-7537307)
               

               
               1-529, gnl|Hg17|chr2 (179527410-179526875)
               

               
               1-529, gnl|Mm7|chr2 (76858393-76857819)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-529, gnl|bosTau2|chr2 (7536776-7537307)
               

               
               1-529, gnl|Hg17|chr2 (179527410-179526875)
               

               
               1-529, gnl|Mm7|chr2 (76858393-76857819)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	1-529, gnl\|bosTau2\|chr2 (7536776-7537307)
	1-529, gnl\|Hg17\|chr2 (179527410-179526875)
	1-529, gnl\|Mm7\|chr2 (76858393-76857819)