Non-Coding RNA Search

rche22_k6.y1

Sequence:


               
               CAAAGCTGGTAAGTTACCCCCAAAGCCCAATCACTTGGCATTCCCCACATGCCTCTCATA
TTTGGTACAGTCTTTTTACTACCTATATAGCTTATAGTCTCCTCTTCTGAAAGCTCATAG
TTGGTATGACAAATGAGGGAACTCTCTAGTAACTAGGCCATTCCATCAACCCTAGCACCT
CCTTCTCCAGCCATTCTGGGCAAATGGGAATTTCTATGCTTAAAGCATATAAAGTTGTAC
CAGGAAGAGGCAGTTCTTGGAAAAGCAAAGCCAAGGGGCTGCCAAGCATTTGAAAATATG
CTCATGTTCACCAACGAGTCAGACAAGTAAAGGAGAGGTACCTTGGGATGGTCCCGGGCA
ACTGGTCACCAAACACTGTGCCACATGCTACTGCTGGGTGTGGGAGAAAGAGCCTCCTCA
TTTATTGTTGGTGAGGATGGGGAGGTGGCAGACCTTTTGCAAAAGGAGTTTGCAATATCT
TCTAAAATTAAAGCCAGGGATGCTTCCACCCAGCAGTCTCACTTCTGGGCACGTGTAGAT
TTGTAACAAGAGTTTTTATCCTGCTGTCACTCACAGCAGCAAAAAGCTGGAAACACAGTG
GATGACTGTCAGAGGAGGTCATCTGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGCTGGTAAGTTACCCCCAAAGCCCAATCACTTGGCATTCCCCACATGCCTCTCATA
TTTGGTACAGTCTTTTTACTACCTATATAGCTTATAGTCTCCTCTTCTGAAAGCTCATAG
TTGGTATGACAAATGAGGGAACTCTCTAGTAACTAGGCCATTCCATCAACCCTAGCACCT
CCTTCTCCAGCCATTCTGGGCAAATGGGAATTTCTATGCTTAAAGCATATAAAGTTGTAC
CAGGAAGAGGCAGTTCTTGGAAAAGCAAAGCCAAGGGGCTGCCAAGCATTTGAAAATATG
CTCATGTTCACCAACGAGTCAGACAAGTAAAGGAGAGGTACCTTGGGATGGTCCCGGGCA
ACTGGTCACCAAACACTGTGCCACATGCTACTGCTGGGTGTGGGAGAAAGAGCCTCCTCA
TTTATTGTTGGTGAGGATGGGGAGGTGGCAGACCTTTTGCAAAAGGAGTTTGCAATATCT
TCTAAAATTAAAGCCAGGGATGCTTCCACCCAGCAGTCTCACTTCTGGGCACGTGTAGAT
TTGTAACAAGAGTTTTTATCCTGCTGTCACTCACAGCAGCAAAAAGCTGGAAACACAGTG
GATGACTGTCAGAGGAGGTCATCTGCCA

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               144-310, gnl|bosTau2|chr23 (9297202-9297037)
               

               
               144-310, gnl|canFam2|chr12 (7352650-7352864)
               

               
               144-310, gnl|dasNov1|scaffold_92491 (6988-6789)
               

               
               144-310, gnl|hg17|chr6 (35259459-35259670)
               

               
               144-310, gnl|Hg17|chr6 (35259669-35259509)
               

               
               144-310, gnl|loxAfr1|scaffold_74058 (976-1191)
               

               
               144-310, gnl|oryCun1|scaffold_86017 (2406-2215)
               

               
               144-310, gnl|rheMac2|chr4 (34903314-34903524)
               


               
               325-618, gnl|bosTau2|chr23 (9296993-9296697)
               

               
               325-618, gnl|Hg17|chr6 (35259476-35259173)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-310, gnl|bosTau2|chr23 (9297202-9297037)
               

               
               144-310, gnl|canFam2|chr12 (7352650-7352864)
               

               
               144-310, gnl|dasNov1|scaffold_92491 (6988-6789)
               

               
               144-310, gnl|hg17|chr6 (35259459-35259670)
               

               
               144-310, gnl|Hg17|chr6 (35259669-35259509)
               

               
               144-310, gnl|loxAfr1|scaffold_74058 (976-1191)
               

               
               144-310, gnl|oryCun1|scaffold_86017 (2406-2215)
               

               
               144-310, gnl|rheMac2|chr4 (34903314-34903524)
               


               
               325-618, gnl|bosTau2|chr23 (9296993-9296697)
               

               
               325-618, gnl|Hg17|chr6 (35259476-35259173)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	144-310, gnl\|bosTau2\|chr23 (9297202-9297037)
	144-310, gnl\|canFam2\|chr12 (7352650-7352864)
	144-310, gnl\|dasNov1\|scaffold_92491 (6988-6789)
	144-310, gnl\|hg17\|chr6 (35259459-35259670)
	144-310, gnl\|Hg17\|chr6 (35259669-35259509)
	144-310, gnl\|loxAfr1\|scaffold_74058 (976-1191)
	144-310, gnl\|oryCun1\|scaffold_86017 (2406-2215)
	144-310, gnl\|rheMac2\|chr4 (34903314-34903524)

	325-618, gnl\|bosTau2\|chr23 (9296993-9296697)
	325-618, gnl\|Hg17\|chr6 (35259476-35259173)